Salvia miltiorrhiza (redroot sage): 131022622
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Entry
131022622 CDS
T09291
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03030
DNA replication
smil03410
Base excision repair
smil03420
Nucleotide excision repair
smil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131022622
03410 Base excision repair
131022622
03420 Nucleotide excision repair
131022622
03430 Mismatch repair
131022622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smil03032
]
131022622
03400 DNA repair and recombination proteins [BR:
smil03400
]
131022622
DNA replication proteins [BR:
smil03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131022622
DNA repair and recombination proteins [BR:
smil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131022622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
RCF1-5-like_lid
Rad17
AAA_22
AAA_30
AAA_5
AAA_19
BRCT_2
nSTAND3
AAA_18
DUF6857
RuvB_N
AAA_assoc_2
Zeta_toxin
AAA_24
Sigma54_activ_2
AAA_28
AAA_14
AAA_16
NTPase_1
DNAX_ATPase_lid
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
131022622
NCBI-ProteinID:
XP_057808112
LinkDB
All DBs
Position
1:35519156..35526979
Genome browser
AA seq
991 aa
AA seq
DB search
MSQDIRKWFMKQHGKDAGNGNTSNQAKPSTPQKPPVVQGEKESSSRRKTSKYFSKDAQSA
KDEMEVEEVSAKKAQKGSTGSPNVKPPSGKKTRKFEISDDDDDDDDFATPTSRKGSVGAS
PNKKLKSGSGKGVARKIVDDIDEDDDQTVKSNAKSAGSGRGRGAKGSAVTQKTVESMDVD
KSDAEDMDDKDVKSVKPGGRGRGGRGAPASGRGRGGGGRGGGFMNFGERKDPPHKGEKEV
PEGAPECLNGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKS
EKAKELGTAFITEDGLFDMIRASNKSRKPVDKVAPSPPKKSPQKPEKSNMFPSHASQTVT
NSDTKGLASISASSKRKNQSSPQTLLSWTEKYRPKVPNDIVGNQSLVKQLHDWLVNWNEQ
FLDDRKKGKGKKQSDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKAD
GKIERGIHGSTSNSIKELVNNQSLSFKPESSQHVKTVLIMDEVDGMSAGDRGGVADLIAS
IKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQVAKRLSKIASSEGLQANEIAL
EELAERTNGDIRMAVNHLQYMSLSMSVIKFDDIRQRLQSNSKDEDISPFTAVDKLFGFNS
GKLQMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDDNGMKRMNFIARAAESIGNGDI
INVQIRRYRQWQLSQSGCIASCITPAALLHGQRETLEQGERNFNRFGGWLGKNSTAGKNN
RLLEDLHVHLLASRESNLGRSTLRLDYLTLLSKRLTEPLKKLPKDEAVEKVVEFMELYSI
SMEDFDTIVELSKFKGHPSPLDGVLPAVKAALTKAYNKGSSSRIIKTADLITLPGIKKAP
KKRVAAMLEPLDETLPESTENDEENLSDAEDLEDDLADPEKQQLQSDLQSLNSKAIKVQM
ELKGAASSSGKKAPSGRGGGRGSGSASKRKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagatataagaaagtggttcatgaagcaacatggtaaagacgcaggaaatggc
aatacatcgaaccaagcaaagccatctacacctcagaagcctcctgttgtacaaggagag
aaagaatcttccagtaggaggaagacaagcaaatatttttctaaggatgcacagagtgca
aaagatgagatggaggttgaggaagtttctgcaaagaaggcacaaaagggtagtacaggg
tcacccaatgtgaagcctccatcaggtaaaaaaacccgcaagtttgaaatcagtgatgat
gatgacgacgatgatgattttgccacacctacctcgaggaagggttcagtaggcgctagt
ccaaacaagaagttgaaaagtggatctggtaaaggtgttgctcggaaaattgttgatgat
attgatgaagatgacgatcaaacagtaaaatctaatgcaaaatctgctggaagtggtaga
ggtcggggtgcaaaaggctctgcagtcacccaaaagactgtagaaagcatggatgttgat
aagagtgatgcagaggacatggatgataaagatgttaaatctgtaaaacctggtgggcga
ggccgtggtggaagaggtgcaccagcaagcggaagaggcagaggtggtggaggaaggggg
ggtggttttatgaacttcggtgagaggaaagatcctcctcataaaggagagaaggaagtt
cctgaaggtgctccagaatgtttaaatggtttgacttttgtgattagtggaacacttgac
agcttagaaagagaagaagctgaggatctgatcaaacgtcatggtgggcgtgttactggt
tctgtcagcaaaaagacgaattatcttctatgtgacgaagatattggtggacggaagtct
gagaaggccaaagagcttggtactgcttttattacggaggatggcttgttcgatatgatt
cgagcatcaaataaatcaaggaagccagtagataaggttgctccatctcctcccaagaag
agccctcaaaagcctgaaaaaagtaatatgttcccatcccatgcaagccaaactgtgaca
aactcagatacaaaaggattggcttctatttcagcatcttctaagcgaaaaaaccaatct
tctccacaaactttgctgtcatggacagaaaaatataggccaaaggttccaaatgatatt
gttgggaatcagtctctggtgaagcagctccatgattggttggtaaactggaatgaacaa
ttcctcgatgacaggaaaaagggaaaaggaaagaaacagagcgattctggtgctaagaaa
gctgtgcttttgagtgggacacctggtattgggaagactacctcagcaaagttggttagt
cagatgcttggttttcaaacaattgaggttaatgctagtgacagtcgtggaaaagctgat
ggtaaaattgagagaggaattcatggaagcacttctaactctatcaaagaacttgttaac
aatcaatccctgagttttaaaccagaaagctctcaacatgtaaagactgttctcatcatg
gatgaggttgacggtatgtctgctggagatagaggtggagttgccgatcttattgccagc
atcaaaatctcaaaaattcccataatatgcatctgtaatgatcgctatagtcagaaactt
aagagccttgtgaactactgcttgctgcttagctatcggaagccaacaaagcagcaggtt
gctaaaagattatcaaaaatagcaagttctgaagggcttcaagctaacgagattgcactt
gaggaacttgcagaaagaactaatggagatatacgtatggccgtcaaccacctgcagtat
atgagtctctctatgtctgtcattaaatttgatgacatcagacaacgccttcaaagcaat
tcaaaagatgaagatatttcccccttcacggctgttgataaactgtttggatttaatagt
gggaagttgcaaatggatgagagaatcaaccttagcatgagcgatcctgatctggttcct
cttcttatccaggagaactatatcaattataggccaagttctgctggtaaagatgataat
ggtatgaaaaggatgaacttcattgctcgggctgcagagtccattgggaatggtgatatt
ataaatgtccagatacggagataccggcagtggcagctctctcagagtggttgtattgca
tcttgcatcactcctgcagccctgttgcatggccaacgagagacacttgagcagggggaa
cgtaatttcaatagatttggtggatggctagggaagaattctactgcagggaagaataac
cgacttttggaggaccttcatgttcatcttcttgcttctcgtgaatcaaacttaggaagg
tcgacattgcgacttgactacctaactcttctttcgaaacggttgactgaacctttgaag
aagctaccgaaggatgaagctgttgagaaagttgtcgagtttatggagctgtactctatt
agcatggaagattttgatacaattgtggagctttccaaatttaaggggcatccaagtcca
ctggatggtgtactgcctgctgtaaaagctgccctcacaaaggcttataacaaaggcagc
tcatcacgtattattaagactgcggatttgatcacacttcctggaattaaaaaggcacca
aagaaacgggttgcagcaatgctagaacctcttgatgaaactttaccagaaagcactgaa
aatgatgaagaaaacctctcagatgccgaggacctagaagatgacttggctgatccagag
aagcagcagctacaatcagatctgcagtccctaaattcaaaagccattaaagttcaaatg
gagttgaagggtgctgcaagttcaagtggcaaaaaggcgccctcaggcagaggaggcggt
cggggctctgggtctgcctcaaagagaaagagatga
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