Salvia miltiorrhiza (redroot sage): 131022653
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Entry
131022653 CDS
T09291
Name
(RefSeq) uncharacterized protein LOC131022653 isoform X1
KO
K06100
symplekin
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131022653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131022653
03019 Messenger RNA biogenesis [BR:
smil03019
]
131022653
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131022653
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131022653
U7-dependent histone pre-mRNA processing factors
131022653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
mTOR_dom
HEAT_2
HEAT_EZ
HEAT_GCN1_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
131022653
NCBI-ProteinID:
XP_057808154
LinkDB
All DBs
Position
4:10131958..10141812
Genome browser
AA seq
1335 aa
AA seq
DB search
MVAMMAAVSREKIAGRINSIKYGGAADLSLKLDQLRRLREELMAADSVLVVEVVSPVLDL
LSDRLSPVRKFITQMIGEIGLKHLQLLPEIIPALVDVLKDETPAVARQAISCGFDIFRYS
LVNVAIQGLYSSEFDESLRSSWACVLKFRDEICSMAFKEESEGRKLPALKFVESVVLLYT
PDPNGSLEPPSDKFFQGNFDEFNVSWLRGGHPLLNVRDLSAEASQSLSLLLDQLRSPSLK
SHSYLVIIVLIKSLSAVARKRPAFYGRILPVLLGLDPSSSVSKGMHLAGVHHALKNAFES
CLNCTHPGAAPWRDRLVNALKEIKVGKSIAQAANELSENNGRTEWTRDSDMSQTLEDEKP
SIKSATEHGSAGRKRTGVPDTIDASEDENSGKRAKSTPGDLDGPGNERNKGQDRAPSSGT
TPLSDVDSGPVQQLVAMFAALVAQGEKAAASLEILISSISADLLAEVVMANIWNLPPKRL
KSEGDEELLTSAAAHTEMVGSDTHIKHLSLLLKDTLLQSTSSLEKETGIEDSELEQTLEE
EPQVTLADSSVAHDDLSSANEQAAVSISESACSGDIPYPMETGYAVITSEVTDIEGRANE
IPGLSSATEDDGLPENMDTMPKGLADSDDANQEKFSNLGGTSIESDRIPTELAQSLSTDR
SEELSPKAEAATTDASSLNSSTATSVGLAPQLVLPKIGAPVIHLADEEKDQLQQLAFVRI
VDAYKQVAVAGGSQVRFSVLAHAGLEFPSELDPWKLLKAHVLSDYINHEGHELTLRVLYR
LFGEAEQDRDFFISATAKSVYEAFILQVAETLRDSFPASDKSLSRLLGEAPYLPKSVFEM
LECLCSPSGGDSVEKELPGGDRVTQGLSAVWSLILLRPPIRDACLQIALKSAVHHLEEVR
MKAIRLVANKLYPLSSISGRIEAFAKEMLLSVVTDDQISMAKEANELHKDENPSSENQPG
SSAAKEILPDSHQISASESISSSAVVEVQRCMSLYFALCTKKHSLFRQIFNAYKGTSKVA
KQVVHRQIPLLVRTIGPSTDLLDILSDPPTGSEGLVIQVVNTLTDGTVPSPNLVSAIKRL
YDTKLKDIDILIPVLPFLSKDEVLLLFPHLVNVLPDKFQVVLSRLLQGFNHSTPVLSPAE
ALIAIHKIDPEKDGVPLKKVTDACNACFEQRHTFSQQVLAKVLNQLVEQIPLPFLFMRTV
LQAIGAFPSLVQFIMEILSRLVSKQIWKSPRQWVGFVKCAHVTLPDSFGVLLQLPAAQLE
NSLNRIPALKAPLVEHASQPNIRSTLPRSTLTVLGLEQELPTSTTQPTQTQTEEVGNSEK
EAATDKSKESSTTTT
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaatgatggcagctgtatcgcgggagaagattgctggtcgaatcaactcgatt
aagtacggaggcgccgctgacctgtcgttgaagctcgaccagctgcggcgactgcgggag
gagctcatggcggcggactccgtgttggttgtggaggtcgtctcccctgttctcgacctc
ctctcagaccgtttgagccccgtccgaaaattcatcactcagatgattggtgaaattggt
ttaaagcacttgcagttgttacctgaaattataccagcacttgtagatgttctgaaagat
gagacacctgctgttgctcgacaggctatctcatgtggttttgatatattccgttattct
ctggtcaatgttgccatccagggcttatactcaagtgaatttgatgaatcactgcgatca
tcatgggcatgtgtgctaaagtttagagatgaaatatgctcaatggcatttaaggaggaa
agtgaagggagaaagttgcctgcattgaagtttgtggaatctgttgtgttactttacacc
cctgaccctaatggttctctggagccaccttctgataaattttttcaaggaaattttgat
gaattcaatgtctcatggcttcgtggtggacatccccttctcaatgttagagatttgtca
gctgaggcaagccaaagtttgagtcttttgctggaccagctgaggtccccatcattgaaa
tcacatagttatttggtgatcatagttctaattaagagtctttcagcagttgcgagaaag
aggcctgctttttatggtcgcattctgcctgttttacttggtttggatccttcaagttct
gttagtaaaggcatgcatcttgctggggtgcatcatgctctgaagaatgcgtttgaatct
tgtttgaattgtacacaccctggtgctgctccgtggagggatcgtttagttaatgcacta
aaagaaattaaagttgggaagtcaattgcacaggctgcaaatgaattgtcagagaacaat
ggaagaactgagtggacaagggattctgatatgtctcaaactcttgaggatgaaaaacct
tctattaagtctgcgactgagcatggtagtgctggtagaaagagaactggagtgccagat
acaatagatgctagtgaagatgagaactccggaaagcgtgcaaaatcaactcctggcgat
ttggatggaccagggaatgaaaggaataagggtcaagatagagctccatctagtggaaca
acaccattgtcagatgtagatagtggaccagtgcagcagcttgtggcaatgtttgctgca
ttggttgctcagggtgagaaagccgctgcttctttggagattctcatctctagcatttca
gccgacttattagccgaagtagttatggccaacatctggaatcttcctccaaaaagactt
aaatctgaaggggatgaagagctgctcacaagtgctgctgctcatactgagatggttgga
agtgatactcacatcaaacatttgtcattgttgctaaaagatacgctcttacaatctacg
tcatctctagagaaagaaactggaattgaagatagtgagctcgagcaaactctagaagag
gaaccacaggtaaccttggctgacagtagtgttgcacatgatgacttgagcagtgccaat
gagcaagctgcagtgtctatcagtgagtccgcttgttctggagacattccatatccaatg
gagactggttatgcagtgatcacatctgaagtcactgatattgaaggtagggcaaatgaa
attccaggactatcttcagcaactgaggatgatggattacctgaaaacatggatactatg
ccaaagggcttggctgattcagatgatgccaatcaagagaaattctctaatttgggtgga
acatcaatagaatcagatagaataccgactgaattagctcaatctttgtccacggatagg
tctgaagagcttagccctaaagctgaagcagcaaccacagatgcaagcagcttaaattcc
tcaactgcaacttctgttgggttagcacctcagttggttctccccaagataggagcccct
gtcatccacctagctgacgaggaaaaggatcagctacaacaactggctttcgtgcgcatt
gttgatgcatataaacaagttgctgttgctggtggctctcaagtccgtttttctgtcctc
gcccatgcaggattggagtttccttcagagctagacccatggaagttactgaaggctcat
gtattgtcggactacataaatcatgaggggcacgagttaacattgcgcgtcctctacagg
ttatttggtgaggcagaacaagatcgtgacttttttatttcagccactgctaaatccgta
tatgaagcatttattctccaagtggcagaaacacttagggattcttttccagcttctgac
aaatctctgagtaggttgcttggggaggccccatatctgccaaagtcagtttttgaaatg
ttggagtgcttgtgctctcctagtggaggtgatagcgtagagaaggagttgcctggtgga
gatagagttacccagggacttagtgctgtctggagcttgattttgctcagacctccaatt
cgcgatgcttgcctccaaattgctttgaagagtgcggtgcatcacttagaagaagttcga
atgaaggcaatacgtctggtggcaaacaagctttatcctctgtcatcaatatctggaaga
attgaggctttcgccaaggaaatgttgctgtcagttgtaacagatgatcaaatctctatg
gcaaaggaggctaatgagctacataaggatgaaaatccttcaagtgaaaaccagccaggt
agttcagcagctaaagagattctcccagacagtcatcagatatcagcatctgaaagcatt
tcatcttctgctgtggttgaggtgcaacgttgcatgtctctttatttcgcactgtgtaca
aagaaacattctctcttccgacaaatttttaatgcttataaaggcacatccaaggtggca
aagcaggtagttcatcgccaaattcccttacttgttcgaactattggcccatctactgat
ctcctagatatattatctgatccaccaacaggaagtgaaggcctcgtaattcaggtagtg
aatacactgacagatggaacagttccttctccaaacttagtatctgccattaagaggttg
tatgatacaaagctgaaggatatagatattctgattccagtattaccctttttatcaaaa
gatgaggttttactactttttccccaccttgtgaatgtactgccggataagttccaagtc
gtgctttctcgtcttcttcaggggttcaatcattctactcctgtcttgtctcctgctgaa
gcattaattgccatccataagattgatcctgaaaaggatggagttcctttgaaaaaggtc
acggatgcttgcaatgcttgttttgagcagagacatacattttctcagcaagttctggcc
aaagttttgaatcaattggtcgagcaaattcctctaccatttctatttatgcgcacagta
ttgcaagcaattggtgcttttccttctttggtgcaattcataatggagattctttctcgt
cttgtaagcaagcagatatggaaaagtccaaggcagtgggtgggtttcgtgaagtgtgca
catgtgaccctaccagattcttttggtgttctgcttcagctaccggcagcacagcttgaa
aattcattgaatagaatacctgctctcaaggctcctctagttgaacatgcaagccaacca
aacataagatccacacttccgaggtctacattaacggttcttgggttggagcaagagttg
ccaacctcgactacacaaccaactcaaactcagactgaagaggtgggcaattcagaaaag
gaagcagcgactgacaagtccaaggaatcatctactactacgacttga
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