Salvia miltiorrhiza (redroot sage): 131024240
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Entry
131024240 CDS
T09291
Name
(RefSeq) phytochrome B-like
KO
K12121
phytochrome B
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131024240
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
HATPase_c
HisKA
GAF
PAS_4
PAS_9
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
131024240
NCBI-ProteinID:
XP_057809741
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All DBs
Position
5:25327415..25333624
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AA seq
1140 aa
AA seq
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MSTSGSKDIYANQSSAAQSSAAEQRHHHRSSTNNNSSTNRGGHSVSRAVAQYTVDARLHA
VFEQSEKSFDYSQSVRTGNQSVSEQQITAYFSKIQRGGHIQPFGCMIAVDERSFCVIAYS
ENACEMLALTPQSVPSLEKLETLTIGTDVRSLFTPSSSILLERAFGAREITLLNPVWVHS
KNSGKPFYAILHRIDVGIVIDLEPARKEDPALSIAGAVQSQKLAVRVISHLQSLPGGDIK
LLCDTVVECLRELTGFDRVMVYKFHEDEHGEVVAESKRHDLDPYLGLHYPSTDIPQASRF
LFKQNRVRLIVDCTARPITVIQDEALMQPLCLVGSTLRAPHGCHAQYMAFMGSVASLTLA
VIINGNDEDGVGGRNSMRLWGLVVGHHSSARYVPFPLRYACEFLMQAFGLQLNMELQLAS
QLSEKHVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEV
QMKDILQWLLVSHEGSTGLSTDSLADAGYPGAASLGNAVCGMAVAYITSRDFLFWFRSHT
AKEMKWGGAKHHPKDKDDGMRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLQLILRES
FQDSDGSNSKAVVATQGGDLELQGIDELSSVAREMGRLIETARAPIFAVDSEGRINGWNA
KVAELTGLSVEEAMGKSLVHDLVHKESEEMADKLLFHALIGEEEQNVELKLRTFGTETSK
KAIFLVVNACSSKDYTNNIVGVCFVGQDVTGQKFVMDKFINIQGDYKAIIHNPSTLIPPI
FASDENTSCYEWNTAMQKLTGWSREDIIGKMLVGEIFGNCCQLKGSDALTKFMIVLHNAL
GGQDTDKFPFSFFDRSGKYVQALLTANKRVNTEGHIVGTFCFLQIASPELQQAIRVQRQK
EKNCVLKMKELTYICQEIRNPLSGIRFANSVLESTNLTEDQKQFLETSAACERQLLKIMK
DVELERIEDGSMELENSEFLLGSVIDAVVSQAMFLLRERGMQLIHDIPEEVKTLGVYGDQ
FRIQQILADFLLNMVRYAPTSKGWIEMQLSPNLKQISESMTTVHIEFRITCPGEGLPPEL
VQDMFQNGRWATQEGLGLSMCKKLLKLMNGEVQYIRESEKSFFLIVLDLPMSSRDLMSID
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttcaggaagcaaggatatttatgcaaatcagagttccgcagctcaatcctca
gctgcagagcagcgccatcaccaccgcagcagcactaacaacaattccagcacgaacagg
ggcggccattcagtgagcagggctgtagcgcagtacaccgtggatgcgagactccacgcg
gtattcgagcagtctgagaaatcgtttgattattcacagagcgttagaaccggtaatcaa
tccgtctccgagcagcagatcaccgcttatttctcgaaaatacagcgcggaggccacatt
cagccctttggttgtatgattgctgtcgatgagcggagtttctgcgtcatagcttactcg
gagaatgcctgtgaaatgctggccttgacgcctcagtcagtcccaagtcttgaaaagctg
gaaactttgacaatcggcactgatgttaggagccttttcaccccctccagctcgattttg
ctcgagagggcgtttggggcgcgggaaatcacgttgttgaatccagtttgggttcattcc
aagaattctgggaagcccttttatgctattttgcataggatagatgtagggatagtgata
gatttagagcctgctaggaaggaggaccctgctctttccatagctggagctgtacagtct
cagaagcttgctgtgagggtcatttcccatttgcagtcactccccggtggggacattaag
cttttgtgtgatacagttgttgagtgtttgagagagctaacaggatttgatcgagttatg
gtttataagtttcatgaggatgagcatggtgaggttgtggcagagagtaagagacatgat
ttggatccatacctaggattgcattatccttccacggatattccccaggcttcaaggttt
ctttttaagcagaatagagtccggttgatcgtggactgtacagctagacccatcacggtt
attcaggatgaagcactgatgcagcctttgtgtttggtaggttctacactgagggctcct
catggttgccatgcccagtacatggcatttatggggtcagttgcttctttaactttggct
gttattatcaatggaaatgatgaagatggtgttggaggaagaaactcaatgaggctatgg
ggattggttgttggtcaccactcttctgctcgttatgttccattccctcttcgttatgct
tgtgaattcctgatgcaggcgtttggacttcaactgaatatggagttacagttggcgtca
cagttgtctgagaagcatgttttaaggacacagactctattgtgcgatatgttacttcga
gattcacctagtgggattgttacacagagccctagcattatggacctcgtgaaatgtgat
ggtgctgctctatactaccaagggaagtattatcctctgggcgtcacacctactgaggtg
cagatgaaggatattctgcaatggttgctggtgtctcatgaaggttcgacaggtttgagc
actgatagtttagctgatgcagggtatcctggggcagcctctctaggcaatgctgtatgt
ggaatggctgttgcgtatatcacttcaagagatttcttgttctggtttcgttcccatact
gctaaagagatgaaatggggtggagcaaagcatcatccaaaggataaagatgatggcatg
agaatgcatcctcgttcctcattcaacgcgtttctagaagttgtcaagagccgcagtcta
ccatgggagaatgcagagatggatgcaattcactctcttcaactaattttgagagagtca
tttcaggattctgatggaagcaattctaaggcagttgtagcaacccaaggaggggacttg
gagttacaagggattgatgaactcagttctgtagccagagaaatgggtaggttgatagag
actgcaagggctcctatatttgctgttgacagtgaaggccgcataaatgggtggaatgca
aaagttgctgagttgactggactctctgttgaggaagcaatggggaagtccttggttcat
gatcttgttcacaaagaatcggaagaaatggctgacaaacttctatttcatgctctcata
ggtgaggaagagcagaatgtagaattaaagttgaggacatttggtactgaaaccagcaag
aaggctatatttttggtggtcaatgcttgttctagcaaggattatacaaacaacatagtt
ggtgtgtgctttgttggtcaggatgtcaccggtcagaaatttgtgatggataagtttatc
aatattcaaggtgattacaaggcaattatacacaatccgagtactctaattccacctata
tttgcttcggatgagaatacatcttgctatgagtggaacaccgctatgcaaaagctaact
gggtggagtagggaggacatcattggaaagatgttggttggggagatattcggaaattgt
tgtcagctcaagggatcagatgcattgacaaaattcatgattgtcttgcacaatgcactt
ggaggtcaggatactgacaagttcccgttttctttttttgaccgaagtggtaaatatgta
caagctctgttgactgccaacaagagggtaaatacggagggccatattgttggaaccttt
tgtttcttgcaaattgcaagtcctgagttgcaacaagctatcagagtccagaggcaaaag
gaaaagaactgtgttttaaagatgaaagagctcacttatatttgtcaggaaataagaaat
ccattaagtggtatacgttttgctaattcagttctggaaagcacaaatttgactgaagac
cagaagcagtttcttgagaccagtgctgcttgtgagaggcagttattaaagattatgaag
gatgttgaacttgaaagaattgaggatggttcaatggagcttgagaattctgagtttcta
cttgggagtgtaatagatgccgttgttagccaagcaatgttcttgcttagagaaagaggt
atgcagttgatccatgatatacctgaggaagtcaagacactgggagtctatggtgatcaa
tttagaattcaacaaatcttagccgatttcttactgaacatggtgcggtatgcaccaacc
tcaaaaggttggatagaaatgcaactcagtccaaacttgaagcaaatctctgaatcaatg
accacagtgcacatcgaatttaggattacgtgtccaggcgaaggtcttcctcctgaactc
gtccaagacatgttccaaaatgggcgatgggcgactcaggaaggcctaggattaagcatg
tgcaagaaactcttgaagcttatgaatggagaagttcaatatatcagagaatcagagaaa
tctttcttccttattgttcttgatctgcctatgtctagcagggatttaatgagtatcgac
tga
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