Salvia miltiorrhiza (redroot sage): 131024289
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Entry
131024289 CDS
T09291
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131024289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131024289
03009 Ribosome biogenesis [BR:
smil03009
]
131024289
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131024289
Spliceosome [BR:
smil03041
]
Complex A
U1 snRNP components
U1 related factors
131024289
Complex B
131024289
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
Pre-60S particles
Helicases
131024289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131024289
NCBI-ProteinID:
XP_057809786
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All DBs
Position
5:26483200..26489791
Genome browser
AA seq
1150 aa
AA seq
DB search
MATAEASPSTLGPRYAPDDPTLPEPWKGLIDGSTGLLYYWNPETNVTQYEKPTSLPPPLP
PGPPPKMNPIPGARASQSENVQTPQSQQTIQAAHPSHGQMLSSGSHLGPTMQHGYLALEQ
VRPQMPQQPGQQVPSQLGQGQQGHPQSMQLMSMQPGHQAPYPFMQPMPHVQQGQMYPGAQ
MGPPHGFQFTHQHPQYTMHQQNMPSQGLQSSSEQSQHLIQGQQLPQKQEHKIEHGQRDDT
DSHQGRQPGFSPAQQHLMQGQQFPHLREQKAGIPHRDDVEFQQVNQAGFSPAQIQQIGTP
IQNLPPKKSIQSNQNTQFGGSFVNVQPNNPSAHLQQTGTELTHPQHVSRFQNQMGSGTMH
GQQQNPPPVGSNMPYEENQFGRPKNEYLYNTSKDLNVVPNQPPKLAPLPMTRNQQQDPRI
GDFPSQNIAPSLPGRLNAGPPLPGGFGHSPGGPQFPNTAIVRPPVAMIGPSDPIHLSAAE
IYRQKHEVTASGENVPPPFMTFEAAGFPPELLQEMHAAGFAAPTPIQAQTWPIAEQNRDI
VAIAKTGSGKTLGYLIPAFFHLRKLRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSR
VSCTCLYGGASKGAQLKELDRGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLD
MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKSIT
QHVELVPEMDKQRRLEQILRSQEPGSKVIIFCSTKKLCDQLARSLGRNFGAAAIHGDKSQ
GERDWVLNQFRNGRSPVLVATDVAARGLDIRDIRVVINYDFPTGVEDYVHRIGRTGRAGA
TGISFTFFSEQDWKYAPDLVKLLEGANQVVPPEIRDIAVRGGPGFGKDRGMMNRFEPADG
GGGRWDSGGRGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDSGFGGRGGM
RDGNFGGRGGGRDDSFGGPSGSRVGWDRGGRGGHDRLNNFDGRGRGRGRGRGRFDNNRRD
NNSDRSRGRSFSRSPDRVRTWDVSRSSSRSRSRSRGRSRSYSRSRSRSRSWSHSRSPRSS
RSRSPRYNRSRSRSYERYERKPRKSKFDQMEPDAGIGTLPIAPVASEPGAAIDLSLPIGA
AVPSDPPSEP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggccactgccgaggcatcgcctagcacacttgggcccagatatgctccagatgatcca
actctacctgaaccttggaaaggattaattgatggaagtacgggtcttttatattactgg
aatcctgagacgaatgttacgcaatatgaaaaacccacatctctaccgcctcctttgcca
cctgggccacctcctaagatgaatcctatcccaggtgctagagcatcacagtcagagaat
gttcaaacccctcaaagtcagcagactatacaggccgcacatccttcacatggacagatg
ctgagctcggggtctcatttggggcctacaatgcaacatggttatttggctctagagcaa
gtgagacctcaaatgccgcaacaacctggtcaacaagtcccgtctcagttgggacaaggg
caacagggacatccgcagtcaatgcaactaatgtcaatgcagccagggcatcaagctcct
tatccttttatgcagccaatgccgcatgttcaacagggacaaatgtaccctggtgcacag
atgggacctccacatggtttccagttcacacatcaacatccacaatatacaatgcatcaa
cagaacatgccctcacaagggctacaaagttcctcggaacagtctcaacatctaattcag
gggcagcagttgcctcaaaaacaagaacataagattgaacatggccagagagatgatact
gattctcatcaaggaagacagccggggttttctccagcacagcagcatttgatgcaagga
cagcaatttcctcatctccgagagcagaaagctggaattcctcatagagatgatgttgag
tttcagcaagtaaaccaggctggtttttcaccagctcagattcagcaaattgggacacca
attcaaaacttgccaccaaagaagagcattcaatcaaatcaaaatacacagtttggtgga
tcgtttgtcaacgtgcaaccaaacaacccatcagcgcatttgcagcaaacagggacagag
ttgacacacccacaacatgtttctaggtttcaaaatcagatgggctcaggtacgatgcat
ggccagcagcagaacccgccgcctgttggatcaaatatgccctatgaagaaaaccaattt
ggaagacctaaaaatgaatatctttataacacctccaaagatctcaatgtggtacctaat
cagcccccaaagcttgcgccattgcccatgaccagaaaccagcagcaggaccccagaatt
ggtgacttcccttctcaaaacattgcaccaagtcttccagggagattgaatgccgggcct
cctttgcctggtggctttggtcattccccaggtggccctcaatttccaaacactgctatt
gtgaggcctcctgtagctatgattggaccttcggatcctattcatttatcagcagcagaa
atttatcgtcaaaagcacgaagttacagcctcgggcgaaaatgttcctcctccatttatg
acatttgaggctgctgggtttccgccggagttactgcaggagatgcatgctgctggtttt
gctgctcctacaccgattcaggcacaaacatggcctattgccgaacagaatagagacata
gttgctattgcaaagacgggttctgggaaaacactgggatatttgatcccagcattcttt
caccttaggaaactacgtaacaatcctcagaacggcccaactgtgttggtattggcccca
acacgggagcttgccactcaaatccaggatgaagcaattaaatttggtcgatcatctaga
gtctcttgcacgtgtttgtatggtggtgcttcaaaaggcgctcaattgaaagagctagat
cgtggagcagatattgttgtggcaactcctggtcggctcaatgatatccttgaaatgaag
aggatcgactttaggcaggtctccctccttgttcttgatgaggctgatagaatgctggac
atgggatttgagcctcaaattcgcaagattgtcaatgagattcctccaagaaggcaaact
cttatgtacactgcaacatggcccaaagaagttcgaaaaattgcaagtgaccttcttgtg
aatcctgttcaggttaatattggaagtgttgatgaactcgctgcaaataagtccattaca
cagcatgtggaattagtccctgaaatggacaaacagagacgcttggagcaaattcttaga
tcccaagaacctggctccaaagtcattatattctgttccactaaaaagttgtgtgaccag
ctcgcacgaagtcttgggcgcaattttggtgctgctgcaattcatggagacaagtcccag
ggggagagagattgggttttgaatcaatttcggaatggacggtctccagttcttgttgcc
actgatgttgctgcgcgggggcttgatataagagatataagggtagtgatcaattacgac
ttccctactggagttgaagactatgttcatcgcattggacgaactgggagagctggtgct
acggggatctcatttacatttttctcagagcaggactggaaatatgctcctgaccttgtt
aaacttttggagggtgccaaccaagttgtgcctcctgaaataagggacatagcagtacgt
ggtgggcctgggtttggcaaggatcgtggcatgatgaatcgttttgagcctgctgatggt
ggtggtgggcgttgggattctggtggccgtggtggccgtggtgggatgagagatggcggt
tttggaggacgtggagggatgagggatggtggttttggtggacggggtggaatgagagat
ggtgggtttggagggcgtggagggatgagagacagcggctttggagggcgtgggggcatg
agggatgggaattttggtggtcgtggtggtgggagggatgacagctttggcggtccctca
ggttctcgggttggttgggacagaggtggccgtggtggacacgatcgtctcaataatttt
gatggacgaggacgtggtagagggcggggacgaggaagatttgataacaaccgaagagac
aacaactcagaccgaagtaggggtaggagtttcagccgcagtcctgatagagttcgaaca
tgggatgttagtcgaagctcaagtagaagtagaagcagaagccggggcaggagcaggagt
tatagcagaagtcgtagccggagcagaagttggtcacacagccgcagtccaaggagcagc
cgcagccgcagcccaagatacaatcgaagccggagtcgaagctacgagagatacgagaga
aaaccaaggaaatccaagtttgatcagatggaaccagatgctggaattggaacgttgcca
attgctccagttgcatcagaacccggtgcagccattgatctcagcctccccatcggggcg
gccgtgccgagcgacccaccatcggagccatag
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integrated database retrieval system