KEGG   Salvia miltiorrhiza (redroot sage): 131024289
Entry
131024289         CDS       T09291                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131024289
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smil03041]
    131024289
   03009 Ribosome biogenesis [BR:smil03009]
    131024289
Enzymes [BR:smil01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     131024289
Spliceosome [BR:smil03041]
 Complex A
  U1 snRNP components
   U1 related factors
    131024289
 Complex B
    131024289
Ribosome biogenesis [BR:smil03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    131024289
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 131024289
NCBI-ProteinID: XP_057809786
LinkDB
Position
5:26483200..26489791
AA seq 1150 aa
MATAEASPSTLGPRYAPDDPTLPEPWKGLIDGSTGLLYYWNPETNVTQYEKPTSLPPPLP
PGPPPKMNPIPGARASQSENVQTPQSQQTIQAAHPSHGQMLSSGSHLGPTMQHGYLALEQ
VRPQMPQQPGQQVPSQLGQGQQGHPQSMQLMSMQPGHQAPYPFMQPMPHVQQGQMYPGAQ
MGPPHGFQFTHQHPQYTMHQQNMPSQGLQSSSEQSQHLIQGQQLPQKQEHKIEHGQRDDT
DSHQGRQPGFSPAQQHLMQGQQFPHLREQKAGIPHRDDVEFQQVNQAGFSPAQIQQIGTP
IQNLPPKKSIQSNQNTQFGGSFVNVQPNNPSAHLQQTGTELTHPQHVSRFQNQMGSGTMH
GQQQNPPPVGSNMPYEENQFGRPKNEYLYNTSKDLNVVPNQPPKLAPLPMTRNQQQDPRI
GDFPSQNIAPSLPGRLNAGPPLPGGFGHSPGGPQFPNTAIVRPPVAMIGPSDPIHLSAAE
IYRQKHEVTASGENVPPPFMTFEAAGFPPELLQEMHAAGFAAPTPIQAQTWPIAEQNRDI
VAIAKTGSGKTLGYLIPAFFHLRKLRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSR
VSCTCLYGGASKGAQLKELDRGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLD
MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKSIT
QHVELVPEMDKQRRLEQILRSQEPGSKVIIFCSTKKLCDQLARSLGRNFGAAAIHGDKSQ
GERDWVLNQFRNGRSPVLVATDVAARGLDIRDIRVVINYDFPTGVEDYVHRIGRTGRAGA
TGISFTFFSEQDWKYAPDLVKLLEGANQVVPPEIRDIAVRGGPGFGKDRGMMNRFEPADG
GGGRWDSGGRGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDSGFGGRGGM
RDGNFGGRGGGRDDSFGGPSGSRVGWDRGGRGGHDRLNNFDGRGRGRGRGRGRFDNNRRD
NNSDRSRGRSFSRSPDRVRTWDVSRSSSRSRSRSRGRSRSYSRSRSRSRSWSHSRSPRSS
RSRSPRYNRSRSRSYERYERKPRKSKFDQMEPDAGIGTLPIAPVASEPGAAIDLSLPIGA
AVPSDPPSEP
NT seq 3453 nt   +upstreamnt  +downstreamnt
atggccactgccgaggcatcgcctagcacacttgggcccagatatgctccagatgatcca
actctacctgaaccttggaaaggattaattgatggaagtacgggtcttttatattactgg
aatcctgagacgaatgttacgcaatatgaaaaacccacatctctaccgcctcctttgcca
cctgggccacctcctaagatgaatcctatcccaggtgctagagcatcacagtcagagaat
gttcaaacccctcaaagtcagcagactatacaggccgcacatccttcacatggacagatg
ctgagctcggggtctcatttggggcctacaatgcaacatggttatttggctctagagcaa
gtgagacctcaaatgccgcaacaacctggtcaacaagtcccgtctcagttgggacaaggg
caacagggacatccgcagtcaatgcaactaatgtcaatgcagccagggcatcaagctcct
tatccttttatgcagccaatgccgcatgttcaacagggacaaatgtaccctggtgcacag
atgggacctccacatggtttccagttcacacatcaacatccacaatatacaatgcatcaa
cagaacatgccctcacaagggctacaaagttcctcggaacagtctcaacatctaattcag
gggcagcagttgcctcaaaaacaagaacataagattgaacatggccagagagatgatact
gattctcatcaaggaagacagccggggttttctccagcacagcagcatttgatgcaagga
cagcaatttcctcatctccgagagcagaaagctggaattcctcatagagatgatgttgag
tttcagcaagtaaaccaggctggtttttcaccagctcagattcagcaaattgggacacca
attcaaaacttgccaccaaagaagagcattcaatcaaatcaaaatacacagtttggtgga
tcgtttgtcaacgtgcaaccaaacaacccatcagcgcatttgcagcaaacagggacagag
ttgacacacccacaacatgtttctaggtttcaaaatcagatgggctcaggtacgatgcat
ggccagcagcagaacccgccgcctgttggatcaaatatgccctatgaagaaaaccaattt
ggaagacctaaaaatgaatatctttataacacctccaaagatctcaatgtggtacctaat
cagcccccaaagcttgcgccattgcccatgaccagaaaccagcagcaggaccccagaatt
ggtgacttcccttctcaaaacattgcaccaagtcttccagggagattgaatgccgggcct
cctttgcctggtggctttggtcattccccaggtggccctcaatttccaaacactgctatt
gtgaggcctcctgtagctatgattggaccttcggatcctattcatttatcagcagcagaa
atttatcgtcaaaagcacgaagttacagcctcgggcgaaaatgttcctcctccatttatg
acatttgaggctgctgggtttccgccggagttactgcaggagatgcatgctgctggtttt
gctgctcctacaccgattcaggcacaaacatggcctattgccgaacagaatagagacata
gttgctattgcaaagacgggttctgggaaaacactgggatatttgatcccagcattcttt
caccttaggaaactacgtaacaatcctcagaacggcccaactgtgttggtattggcccca
acacgggagcttgccactcaaatccaggatgaagcaattaaatttggtcgatcatctaga
gtctcttgcacgtgtttgtatggtggtgcttcaaaaggcgctcaattgaaagagctagat
cgtggagcagatattgttgtggcaactcctggtcggctcaatgatatccttgaaatgaag
aggatcgactttaggcaggtctccctccttgttcttgatgaggctgatagaatgctggac
atgggatttgagcctcaaattcgcaagattgtcaatgagattcctccaagaaggcaaact
cttatgtacactgcaacatggcccaaagaagttcgaaaaattgcaagtgaccttcttgtg
aatcctgttcaggttaatattggaagtgttgatgaactcgctgcaaataagtccattaca
cagcatgtggaattagtccctgaaatggacaaacagagacgcttggagcaaattcttaga
tcccaagaacctggctccaaagtcattatattctgttccactaaaaagttgtgtgaccag
ctcgcacgaagtcttgggcgcaattttggtgctgctgcaattcatggagacaagtcccag
ggggagagagattgggttttgaatcaatttcggaatggacggtctccagttcttgttgcc
actgatgttgctgcgcgggggcttgatataagagatataagggtagtgatcaattacgac
ttccctactggagttgaagactatgttcatcgcattggacgaactgggagagctggtgct
acggggatctcatttacatttttctcagagcaggactggaaatatgctcctgaccttgtt
aaacttttggagggtgccaaccaagttgtgcctcctgaaataagggacatagcagtacgt
ggtgggcctgggtttggcaaggatcgtggcatgatgaatcgttttgagcctgctgatggt
ggtggtgggcgttgggattctggtggccgtggtggccgtggtgggatgagagatggcggt
tttggaggacgtggagggatgagggatggtggttttggtggacggggtggaatgagagat
ggtgggtttggagggcgtggagggatgagagacagcggctttggagggcgtgggggcatg
agggatgggaattttggtggtcgtggtggtgggagggatgacagctttggcggtccctca
ggttctcgggttggttgggacagaggtggccgtggtggacacgatcgtctcaataatttt
gatggacgaggacgtggtagagggcggggacgaggaagatttgataacaaccgaagagac
aacaactcagaccgaagtaggggtaggagtttcagccgcagtcctgatagagttcgaaca
tgggatgttagtcgaagctcaagtagaagtagaagcagaagccggggcaggagcaggagt
tatagcagaagtcgtagccggagcagaagttggtcacacagccgcagtccaaggagcagc
cgcagccgcagcccaagatacaatcgaagccggagtcgaagctacgagagatacgagaga
aaaccaaggaaatccaagtttgatcagatggaaccagatgctggaattggaacgttgcca
attgctccagttgcatcagaacccggtgcagccattgatctcagcctccccatcggggcg
gccgtgccgagcgacccaccatcggagccatag

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