Salvia miltiorrhiza (redroot sage): 131025165
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Entry
131025165 CDS
T09291
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil04120
Ubiquitin mediated proteolysis
smil04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131025165
04120 Ubiquitin mediated proteolysis
131025165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smil04121
]
131025165
Enzymes [BR:
smil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131025165
Ubiquitin system [BR:
smil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131025165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
FlxA
zf-HC5HC2H
zf_RING_Vps8
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
131025165
NCBI-ProteinID:
XP_057810776
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Position
5:complement(54899396..54903602)
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AA seq
539 aa
AA seq
DB search
MMRLQTYGGISLIATLAVIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCIMWQL
TKKIFLGKLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFIAMVTALLLIKALHWLA
QKRVEYIETTPSVPKLAHIRIVSFMGFLLLLDCSFLYNSVKYLLETKQASVSLFFSFEYM
ILATTTVSTFLKYIFYVSDMLMDGQWEKKAVYTFYLELVRDLLHLTMYMCFFLVIFVNYG
VPLHLIRELYETFRNFKIRVADYIRYQKITSNMNERFPDATSEEINSSDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQNTCPTCRAPVVPPENGTTTTGTRAGGHQQGTSATGTS
SQGSISAGAANGNISQHQARLQAAASAASIYQKSFVYPSPSTLAWSPGHTLLPQTVGSSS
HTMTANDGGEGTMSGFLQQYQLSNTTFIQSPHGTFVPSEFEGPNGQYGVGSASGSQQDIQ
VKLIERQIEFLQRQLQLLQAPGSEKKTDAGAPDIKGKAVSSPSSSIVDSSEMGNPEAAN
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttgcaaacctatggagggattagtttaatagctacactggctgttatctat
catgcatttagtagtagaggccagttttatcctgcaatggtttacttatctacttcaaag
atcagtttggtgctgcttttgaatatgggcctggttgttatgtgcattatgtggcaatta
acaaagaagatcttccttggcaagttacgagaggcagaagtggaaaggctgaatgagcag
tcatggcgggaagtcatggaaatactgtttgcaataactatctttagacaagatttttct
gttacattcattgcgatggtcactgctttacttttgatcaaagctttgcattggttggcc
cagaagagagttgaatacattgaaactactccgtctgttcctaagctagctcatatccga
attgtatctttcatgggattccttctccttcttgattgtagctttctctacaactcagtc
aagtatctgttggaaaccaaacaggcttcagtttcactcttcttttcattcgaatacatg
atattggccacaacaactgtatcaacttttttgaaatatatattctacgtcagtgacatg
cttatggatggacaatgggagaagaaggctgtttacaccttttacttggagcttgtgcga
gacttgcttcacttgactatgtacatgtgtttcttcctcgtcatttttgtgaattatggt
gtgcctctacacttgatccgggagctgtatgagactttccgtaacttcaagatccgtgtt
gctgattatatacgctaccagaagattacttcaaatatgaatgaacgtttcccagatgca
acatctgaagagatcaactcgagtgatgctacctgcattatttgccgagaggagatgact
acagcaaagaaacttctatgtgggcatctctttcatgttcactgcctcaggtcatggtta
gaaagacaaaatacatgccctacatgcagagcacctgttgtaccacctgaaaatgggacg
actactactggaacgagggctggtgggcatcaacaaggaactagcgctaccggtacatca
tctcaaggctctatcagtgctggtgcagcaaatggtaatatcagtcagcatcaggctaga
ctccaagctgctgcttctgctgcatctatatatcagaagtcttttgtttatccttctcca
agtactctagcatggtcacccggacatacattacttcctcaaacagttggatcttccagc
cacactatgacggctaatgatggtggagagggaactatgagtggatttttgcaacaatac
cagctttccaacaccacatttatccagtcacctcatggtacttttgttccttccgaattt
gagggtcctaatgggcaatatggagtagggagtgcatcaggctctcaacaggatatacaa
gttaaattaatcgagcgccagattgagtttctacaacggcagctccagcttctgcaagca
ccaggcagcgagaaaaaaacggacgcaggagcaccggatatcaaagggaaggcagtatca
tcaccatcttcgtctattgtagactctagcgagatgggcaacccagaggccgcaaactaa
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