Salvia miltiorrhiza (redroot sage): 131025396
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Entry
131025396 CDS
T09291
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131025396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
131025396
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131025396
Spliceosome [BR:
smil03041
]
Complex C
Other components
Step II factors
131025396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
AAA_16
AAA_30
ABC_tran
SLFN-g3_helicase
nSTAND3
ATPase_2
NPHP3_N
Flavi_DEAD
AAA_29
Helicase_RecD
NB-ARC
FtsK_SpoIIIE
T2SSE
AAA_33
AAA_23
nSTAND1
Dynamin_N
DAP3
SRP54
Motif
Other DBs
NCBI-GeneID:
131025396
NCBI-ProteinID:
XP_057811120
LinkDB
All DBs
Position
5:complement(57080259..57085667)
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AA seq
709 aa
AA seq
DB search
MSIISMAELPILQFEDKIVETVDKNPVVVVIGETGSGKSTQLSQILHRRGYTKSGCIAVT
QPRRVAAVTVSRRVSEELNVRLGDEVGYAIRFEDRTSEKTIIKYLTDGVLLRESLSNPEL
SQYSVIILDEAHERSLNTDVLLGLMKRLIKLRASNLKVLVTSATLDGEKVSRFFSNCPIL
NVPGKLFPVEIHHSSERPKSYIDASLKKALDIHTQEPEGDILIFMTGQDDIEKLVSRLEE
RIQRLEEGSCMDAVIYPLHGSLPPELQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV
IDPGFVKQRQYNPSTGMYSLDIVQISKVQANQRAGRAGRTRPGKCYRLYSSVAYKDDFLD
ATIPEIQRSSLAGSILYLKSLDLSDINILKFDFLDPPSFEALEDALKQLYLIDAIDDEGS
ITSLGRTMAELPLEPSLSRTLLEANECGCLSQALTVAAMLSAETTLLIGQSKSADKKRKH
TPSNLPDGSGFGDHIQFLQIFELWHQTDYHIDWCKENNLQVRGMKFVKDVRKQLCQIMQK
IAKGPMDVKTSKRRREDQYYRSLRKALCSGYGNQLAERMLRHNGYKTLGFKSQLVQVHPS
SVLRTDEEGMFPNYVIYHELIATTRPYMRNVCAVEMPWVRPVFAKLENLNVGKLSGGANQ
SHEEVQPENAVVQKDDDGNAAPAQPAEDRDSKILAARERYLARRGQANK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattatttcaatggcagaactgccaattctccaatttgaagacaaaatcgtcgaa
accgtggataagaatccggtagtagttgtaatcggtgaaactggctcgggaaagagtacg
cagctctctcaaattcttcatcgacgaggttacaccaaatcgggttgcatcgctgtaact
cagccgcgtcgagttgccgctgttacagtatcaaggcgtgtctcagaagaattgaatgtg
aggctcggcgacgaggtaggttacgcgattcgctttgaagatagaacttcggagaagacg
attattaaatacctaaccgatggagttctcttgcgcgaaagtctttccaacccggagctg
agccaatattcggtcatcatattagatgaagctcatgagaggagcttgaacacggatgtg
ttgcttggattgatgaaaagattaattaaattgcgtgcatccaatttgaaagttttggtc
acttcagctacacttgatggtgaaaaagtatcaagattcttctcgaattgcccaatcctc
aacgttccagggaagttattccctgttgagatacatcatagctcagaacgaccaaaaagt
tatattgatgcttctttgaaaaaagctcttgacatacacacacaagaacccgaaggtgac
atcttaatttttatgacgggacaggatgacatagagaagttggtctcaagactggaagag
agaatccaaagattggaggaagggtcttgtatggatgctgtaatttatcctcttcatgga
tctctgcctcctgaattgcaagtccgtgtatttagtcctccacctcccaattgccggcgg
ttcatcgtttctaccaacatagcagagacatctttgactgttgatggtgttgtgtatgta
attgatcctggttttgtgaagcaacgacagtacaacccatcaactggcatgtattctctt
gatattgtccaaatcagcaaagtgcaggctaatcaacgtgcaggaagagctggaagaaca
cgtcctgggaagtgctatcgtttgtactcatctgtggcctacaaggatgacttcctggat
gctacaattccagaaatacagagatcttcccttgcaggaagtatcctgtatttgaaatca
ttggacctatcggacatcaatattctcaaattcgacttcctcgacccaccttcttttgaa
gctttggaagatgccttaaagcagttatacctcattgatgccatagatgacgagggttct
atcacaagtcttggacgaaccatggctgagcttccactggaaccttcactatcaaggacc
ttgttagaggcgaacgagtgtggctgtctatctcaggctttaacagtcgctgcaatgtta
tctgcagagactacattgctcataggccaaagtaaaagtgcggataagaagcggaagcac
actccttcaaatcttcccgatggttctggcttcggtgaccacatccagttcctgcaaatt
tttgagctctggcaccaaactgactatcatattgactggtgcaaggagaataacttgcag
gtgagggggatgaagtttgtgaaggatgtccggaaacagttatgccaaataatgcagaag
attgccaaaggacccatggatgtgaaaacaagtaaaaggcgaagggaagaccaatattac
agatccttgaggaaagctctatgttcaggatacggaaatcaactagcagagcgaatgctt
cgtcataatggctacaagacccttggcttcaagtcacaattagtacaggtgcacccatca
tcagtgctgagaacagatgaagaaggcatgttccccaattatgtcatctatcacgaactc
attgctactacacgtccatacatgcggaacgtatgtgctgtcgagatgccttgggtcaga
cctgtttttgctaaactcgagaatctgaatgtcggcaaactcagtggaggagccaaccag
tctcatgaagaggttcaaccagaaaacgcagtcgtgcagaaggacgacgatggtaatgct
gctccggctcagcctgctgaggaccgcgacagtaaaattctcgcggcccgggaacgttat
cttgctcgtagaggtcaagccaataaatag
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