Salvia miltiorrhiza (redroot sage): 131025519
Help
Entry
131025519 CDS
T09291
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131025519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131025519
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131025519
mRNA degradation factors
5'-3' decay
Decapping complex
131025519
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
131025519
NCBI-ProteinID:
XP_057811295
LinkDB
All DBs
Position
5:complement(11980425..>11985542)
Genome browser
AA seq
751 aa
AA seq
DB search
SLLCFLQGDGLGSLAEIDDLSKTFSKLNNVGPSSAGVRPDWDSRESASGVEWVQGADNTN
WLDRRNFNVETTHETDQLSSQPYSAFRIMDSKSLHRTSSYPEQQQQQQQQHPYEPQNLHH
NYSSEPILIPKTPFTSYPPPGGRSEQASPNSQSNHPNLTHLPGGHQFSISSSNLSPYNNT
QLQLSALPHGPQFGGNLSQLPHGLPVNGRLQNQWANQNSYPGDRSGLPGNVAPQQLSHPN
GLMRPQLMPPQHAQQTRTQHPFPPSYGHPSGLQSQLFNPRLSPSPPMLNNFDVLGLPDLR
DQRAMPMPRGRQGMRYPHHGPDFGNQKGDTGWPRFKSKYMSADEIENILRVQLAATHSND
PYVDDYYYQACLARKSAGAKLRHHFCPANLVDGSSRTRASDEPHAFLQVDALGRVSFSSV
RRPRPLLEVDTQLSSGAGGETKIGEKPLEQEPMLAARVTIEDGICLLLDIDDIDRFLQFN
QLPDGGVQLKQRKQMLLEEIASSFHLVDPLGNNGDAVDLSSKDDLVFLRLVSLPKGRKLL
LKYLQLLFPGELARVVCMAIFRNLRFFFGNLSPDHSTSMTTANLAKTISSCIHGMELKAL
AACLASVVCSAEHPPLRPVGSPAGDGASVVLKSVLERATVLLTDPHAADSCSISNRAFWQ
ASFDAFFSLLTKYCFSKYDSTVQSFLSQGSPDTVAIGADVAKAISREMPVELLRASLPHT
SDQQRKLLLEFVKRSMPVAGLSGPSGGSGSS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
tctctgttatgttttttgcagggagatggattgggatctctggctgaaattgatgatctt
tcaaaaacattttctaagttgaacaatgttgggccatcaagtgcaggagttcgtccagac
tgggattcccgagaaagtgcgtctggtgttgagtgggtacaaggggcagataacactaac
tggctcgatcgacggaattttaatgttgaaaccactcatgaaacggatcaattgtcctca
caaccatattccgctttccggatcatggattccaagtcattgcacagaacatcatcatac
cctgaacagcagcaacaacaacagcagcagcacccgtatgaaccacaaaatctacatcat
aactattccagcgaaccaattcttattccaaaaacaccatttacttcatatccaccccct
ggtggcagatctgaacaagcctcacctaatagccagtccaaccatcctaatcttacacac
ctccctggtggtcaccaattctcaatttcttcatccaatctctcaccatacaataatact
cagcttcaattgtctgccttgcctcatgggccccaatttggtgggaatttgtcccagtta
cctcatggtttgccagtcaatggtcgacttcagaaccaatgggcgaatcagaatagttat
cctggtgatcgttctggcctcccgggcaatgtagctcctcaacagttatcccatccgaat
ggcttaatgcgtccacaattgatgcctccccagcatgctcagcaaaccagaactcagcat
ccatttccgccatcatatggtcatccatcagggttgcagtctcagctattcaatccccgc
ctgtctccttcgccacctatgttgaacaacttcgacgtacttgggctccctgatttgaga
gatcaaagagctatgccgatgccaagaggtagacaaggaatgcgctatcctcatcacggc
cctgattttggtaaccagaagggtgatacgggttggccgaggtttaaatcaaagtacatg
agcgcagatgaaattgagaatattctcagagtgcagcttgctgctacccatagcaatgat
ccttatgttgatgattactattatcaagcttgtctagctagaaaatctgccggtgctaaa
ttgagacaccacttttgcccagctaatttggtggatgggtcttcgaggacccgtgcaagc
gatgagccacatgcttttctccaggttgatgctcttggaagggtttctttctcctcagta
cggaggcctcgaccacttctagaagttgacacccaattatcaagtggggctggtggtgaa
acaaaaattggtgagaagcctttggaacaggagcctatgcttgcagccagggtgactatt
gaggatggcatttgccttctactcgatattgatgatattgacaggtttttgcagtttaat
caattaccagatggtggggtgcagctgaaacagaggaaacaaatgctacttgaagaaata
gcatcatcctttcatctagttgacccactagggaataatggcgatgcagtggatttatca
tccaaagatgaccttgttttcttgagattagtttcacttccaaagggtaggaagcttctt
ttaaagtatcttcaacttctttttcctggtgaacttgctcgagttgtctgtatggccatc
ttccgaaatttgaggttcttctttggaaatctttcccctgatcatagcacatccatgaca
actgcaaatcttgctaagactatatcttcttgtatccatggtatggaactcaaagctctt
gcagcctgtcttgcatcagtggtctgttcagctgagcatcctcctttgcgtccagttggg
agtcctgctggagatggagcttccgttgttcttaaatcggttcttgagagggcaactgtg
cttctgacagacccccatgctgctgatagttgcagcatttctaacagggctttctggcag
gcctcgtttgatgcgttcttcagccttcttacaaagtactgtttcagtaaatatgactct
actgtgcaatcgttcctcagccagggttcaccagacacagtcgccattggggctgatgta
gccaaagcaattagtagagaaatgcctgttgaactcttacgtgcgagccttcctcacaca
agcgatcagcaaagaaaactgctgctggaatttgtgaagcggtctatgcctgtagctggt
cttagtggtccgagtggaggaagtgggagctcatga
DBGET
integrated database retrieval system
