Salvia miltiorrhiza (redroot sage): 131026229
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Entry
131026229 CDS
T09291
Name
(RefSeq) cleavage stimulating factor 64-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131026229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131026229
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131026229
U7-dependent histone pre-mRNA processing factors
131026229
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
131026229
NCBI-ProteinID:
XP_057811995
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Position
5:27101248..27108916
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AA seq
519 aa
AA seq
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MAANAQSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKD
EETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGVGSNVDAPKQFGGQAV
LGHPSLHQPVGDSVATAAASVMAGALGSAQTASIPNQIGLQNSSLLGTDPLTRHLAKMSR
SQLTEVLSEFKALATQNKEQAWKLLLSIPNLPKAIFQVEIMLGVVSPQMLQMPNIRQASS
QPVQPLVQNSQTLSGLPPLPQSKMQLGSLPFAQDSRVSAGVPNQYAALQKFPTQTQIQHS
QLNQNQVLQQAQLLAQSGVSSHPAMHPQSLSGLSVGQQIPVPTSSFNQQMQHPLSQNIGP
VPPANSGFNAVPRSQTVLVNPQFSATGFQLSTPTSSGMLEDTDLKGHALNVPSKTNQIDR
APKLVKLNDGRATPSQAVNATSPMSVPLPSSGIPGRQPPRTEETPDTGKQATQVVKFCKP
YLSNLFLLELCVIFLVLACRHNVWNLQIFIFIVYLLWIC
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaatgcgcaatctcagcatcgctgcgtttttgttgggaacataccgtatgat
gctactgaagagcaactcattcaaatatgcgaggaggttggcccggttgtttccttcaga
ttagttacggatagagaaactggaaaaccaaagggttatgggttctgtgagtacaaggat
gaagagacagctctgagtgctcgccgtaatcttcagggttatgagataaatggtcgtcag
ctaagagttgacttcgctgagaatgacaagaatgctgacaggaaccgggaacaggggcgt
ggtggtcctggtgttggctcgaatgttgatgctccaaaacaatttgggggtcaagcagtc
cttggacatcccagtcttcatcagccggtgggcgattctgttgctacagctgctgcaagt
gtcatggcaggagctcttggatcggctcagactgctagcataccaaatcagattggatta
cagaactcgtccttgttaggcactgatcctttgactcgccacttggccaaaatgtcaagg
agtcagctgactgaggttttgtctgaatttaaggcactggctacgcaaaataaggaacaa
gcttggaaactattgctctccatccccaacttgcccaaagctatttttcaggttgagatt
atgcttggggtagtgtcacctcaaatgttgcagatgcccaatattcggcaagcttcgagc
caaccagtacagcctttagtgcaaaattctcaaactctttctgggctacccccacttcca
caaagcaaaatgcaattgggttcgctgccttttgcacaagatagtcgagtatctgctggt
gtaccaaaccaatatgccgcactccagaaatttcctacacaaacacaaattcaacattca
caactaaaccagaaccaagtcttgcagcaagctcaattgcttgctcaatctggagtttcc
tcccatcccgctatgcatcctcagtcattgagtggtttgtcagttggccaacaaattcca
gtgccaacttcttctttcaaccagcaaatgcaacatcctttgtcacaaaatataggccca
gttccgcccgccaattcagggttcaatgctgtgccaaggtctcagactgtgctcgtaaat
ccacaattttcagctacaggctttcagcttagcaccccaacatcctctggcatgctggaa
gatacggatttgaaggggcatgctttaaatgtccctagtaagacaaaccagatcgataga
gctccaaaattggtgaaattgaatgatggaagagctactccttcacaggctgtaaatgct
acttcacctatgtccgtaccactcccgtcttcgggtattccaggaagacaacctccaaga
acagaagaaactccagacactgggaagcaagctactcaggtagttaaattctgcaagcca
tatctttctaatttattccttttggaattgtgtgtcatatttctcgtacttgcttgtaga
cataatgtgtggaacttacaaatttttatcttcattgtttacctactttggatttgttaa
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