Breviolum minutum: v1.2.022941.t2 Help Entry v1.2.022941.t2    CDS       T04349                                  Symbol symbB.v1.2.022941.t2 Name (OIST) -   KO K14809   ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] Organism smin  Breviolum minutum Brite KEGG Orthology (KO) [BR:smin00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:smin03009]     v1.2.022941.t2 (symbB.v1.2.022941.t2) Enzymes [BR:smin01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      v1.2.022941.t2 (symbB.v1.2.022941.t2) Ribosome biogenesis [BR:smin03009]  Eukaryotic type   Pre-60S particles    Helicases     v1.2.022941.t2 (symbB.v1.2.022941.t2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD Helicase_C DUF4217 zf-C3HC4_3 Prok-RING_4 zf-RING_2 ResIII zf-C3HC4_2 Motif LinkDB All DBs AA seq 1313 aa AA seqDB search MSTSRDWSALEVSEGTQRFIAQMGFKRMTPVQAIAIPLLLKQRDVAVEACTGSGKTLAFL IPTFEIMCRALEEGISRRPGSLQLMVGAAIIAPTRELATQIYEVFGTYLKTAKMEICQRL NAQLCVGGSDAKGAANALRRLAAQEATPPPLHLVAATPGRLRALLDLNEAPLNMKSLELL VFDEADSLLKLGFAMDVQAILSAVPKQRRTGLFSATLTTELQRVMKAGMRNPVHVCVRLK RPAENATEGALKVRKKQPEAIKDGNVEEEETKPAVSHELPTKLSNYYLQLPATERFGFLR HFLQTPEVRKGKTIVFFLTCATVDYFHVLLRELIDLRQVGKKGKKPDVIRIEKLHGQMDP TARSRAYEKFSKSPAEQGAVLLATDVAARGIDVEAVQWIVQVDPPTDPAAFVHRIGRTAR AGQSGRALVLLLPHEDGYLPFLEKRGIQLEELPDELRVEDEAALTTLKRCKRMVETDRAV MLKSTKAFLSFVRAYQEHQLPFLFPFKDLDLGSLATGYALLRLPRLKEILGKQVKGFQQS EVDPASVPFKNKKQEKQRKEKLAKELEEKEQNKEEEKKAQLLKQKQAAKDAAKAEKNRTR TQKRQAKRNDREEQWQSLAKEETLAKKLRKGLITASQFESRLKRIASKESGDEDEDQADI LDLSDEEPNQKTVNAKYAMQRRKRKKGKHKAKTPGMSSMGMSIHATVSSPVSKAMTQPRS VPFLEMTLPYGVPAQPVVWPPRMAPQPSHTPLRGKVVTERYSLPSRVRSCSTSGAVERPV PPVEAVVPVARPVEASVDVERLTEDSGARNSTSGLRPDQLLLHQLQKQVENSIEPRMTDT FVPEKAANLKAPPMLMKAAAARAKQEETILAQDVAMEDQREGLERAAKLIADGEVLLLFT GCKLLSVENRVDWCIWRAPMDFRFLVDPEKMLALSGPSATCKDEVDTGKELMVMPCTVGA VRGLPRTTTLRYMPETQTPSHLVAKSFSGNHPKCARCGASARPAVLMFGEWGDRDWLDSQ HQAERWKNFMQALGEMVGEKSSGLRCVLLEIGAGNRVPTVRQTSEQILEVLLDGGANAKL IRINPGDFEADDSDLENHVDIQQTVFLGGGPEASGFSDSQSSEATSAEPEAEDVTQARSA SRGLRGSGAAVRSKSEENLYLRKNMENLRKQKRHLQQQVESIEARLRNVEAQKLQYQKLF EDSQGSFAVGGEGRDLEITGLHQQLAALLMLKDALNSENIELQARIKGLEEERSRRSPAC SCVICMENLANVVCLPCKHLAICSFCSKHSYDEGSACPICRGNITDRMVIYMP NT seq 4116 nt NT seq  +upstreamnt  +downstreamnt ctgagatctcatatttttcccatgggatttccagtgacaactaactcttccgacgattgg acttcacggtttcttcgccatgtcgacttctagagattggtcggcgttggaggtgtcgga gggcacgcaacgctttattgcccaaatgggcttcaaacggatgactccagtgcaagccat cgccattcccttgttgttgaagcaacgtgatgtggcagtggaggcgtgcactggctctgg taaaactttagctttcttgatcccgacctttgagatcatgtgtcgtgccttggaggaagg catctcaagacgtcctggaagcttacaactcatggtgggtgcagccatcattgcaccaac cagggagttggcgacacaaatctatgaggtttttggtacatatttgaaaactgccaagat ggagatttgccagagactcaacgcccagctctgcgtgggtggttccgatgccaagggcgc ggccaatgccttgcgacgcctggcggcgcaggaagcaacgccgccacccttgcatctggt ggccgccacaccggggaggctacgggcattgttggacttaaacgaagcgcctttgaatat gaaaagcttagagcttctcgtctttgatgaggcggacagtttgttgaagttgggctttgc tatggacgtccaagccatcctcagcgcggtgcctaagcagcgtcgtacggggctcttcag tgccacgctgaccactgaactgcaacgggtcatgaaggccggcatgcggaaccctgtgca cgtctgcgtgcggctgaaacggcccgcggaaaacgcaactgaaggagctttgaaagtgag gaagaagcaaccggaagccatcaaagatggaaatgtggaggaggaggaaactaaacctgc agtaagtcacgagttgccgacgaagttgagcaactattatttgcagctgcctgcgacaga gcgttttggcttcttgcggcattttttgcaaacgcccgaggtgcgcaagggtaaaaccat tgttttcttcctcacctgtgcgactgtggattatttccacgtgctcttgcgtgagttgat cgatcttcgccaagttggtaagaaaggtaagaaacctgatgtgattcgtatcgaaaaatt gcatggtcaaatggatcctactgcgagatctcgtgcttacgaaaaattttcgaagagtcc cgcagaacagggagctgtgttgttagccacggatgttgcagcacgtggcattgacgtgga agctgtgcagtggattgtccaagtggatccaccaacagatccagctgccttcgtccatcg cattgggcgtactgctcgagctggacagagtggtcgagcattggtactgttgctaccaca tgaggatggatatcttcccttcctggagaaacgtggcattcaactggaagagcttccaga tgaattgagggtggaggatgaagctgcattgaccaccttgaagagatgtaagcgtatggt ggaaacagatcgagcagtgatgttgaaatcgaccaaggcttttctctcctttgtgagggc ctatcaggaacatcagttgccctttctctttcccttcaaagatttagatctgggctcttt ggcaacgggctatgctttgctacgccttcctcgactcaaagagatcttgggaaaacaagt gaaaggcttccagcagagcgaggtggaccctgcatcagttcccttcaagaacaagaagca ggagaagcagcgaaaggagaagcttgccaaagagttagaagagaaagaacagaacaagga ggaggagaagaaagcacagctgctgaagcagaagcaagcagctaaggatgcagccaaagc agagaagaatcgaaccaggacacagaagcgacaagcaaagaggaatgaccgcgaggaaca atggcaaagcttggccaaagaggagactttggccaaaaagctgcggaagggactgatcac agcctcgcagtttgagtctagattgaaaaggattgctagcaaggagagtggagatgaaga tgaggatcaggcagacattctggacctgagtgatgaggagcctaatcaaaagacggtgaa tgccaagtatgccatgcagcgcaggaagaggaagaaaggcaagcataaagcaaagactcc ggggatgtcttccatggggatgtcgatccatgccacggtgtccagccctgtgtccaaagc gatgacacagcccaggtccgtgccattcctagaaatgactctgccttatggagtgccagc acagcctgtggtgtggccgcctcgcatggcaccgcagccctcacacactccactgcgggg gaaggtggtcacggagcggtactccctgccgtcacgcgtacggagttgctccacatcagg agctgtggaacgaccagttccaccggtggaagccgtcgtacctgtcgcgcggcccgtgga agcctctgtggatgttgagcgattgacagaagatagtggcgcacggaacagcacttcggg acttcggcctgaccagttgctgttgcatcagctacaaaagcaggtggaaaactccattga acccaggatgacagacacctttgtgccagagaaagctgccaacctaaaagcgccaccaat gctgatgaaggcagctgcagctcgtgcaaagcaagaggagaccattttggctcaagatgt tgccatggaagaccagagagaaggcctggaacgtgctgcaaaactgattgcagatggaga agtgctcttgctctttacaggttgtaagttgcttagtgtcgagaatagagtggactggtg catctggcgtgcacccatggattttcgctttttggtggatccggagaagatgttggcact gtcaggtccttctgccacatgcaaggatgaggtcgataccgggaaggagctgatggtaat gccttgtactgttggtgcagtgcgtgggttgccacggaccaccaccttgcggtatatgcc cgaaacgcagaccccatcacatctggtggcaaaaagcttcagtggaaatcaccccaaatg tgctcgttgtggcgcttctgctcgccctgcagtgttgatgtttggagaatggggagatcg agattggttggattcacagcatcaagcagaacggtggaaaaactttatgcaagccttagg tgagatggttggtgaaaaatcatcaggattgagatgtgttttgttggaaattggtgcagg aaatcgtgttcctacagtccgacaaacttctgaacagatcctggaagtcttgttagatgg aggagcaaatgctaaacttattcgtatcaatcctggtgactttgaagcagatgattcaga cttggaaaaccatgtagacatccagcaaactgtatttctgggtggaggacccgaagcttc tgggttttcagacagccaaagtagcgaggccacctctgcagaacctgaagctgaagatgt gactcaggctcggtccgcttcgcggggactccgtggatctggagctgcagtgcggtccaa gtcggaggagaatctctacctccgcaagaacatggagaatttgcgaaaacaaaagcgtca tctgcagcagcaggtggaaagcattgaagctcgtttgcgaaacgttgaagcgcaaaagtt acaatatcagaaactctttgaggactcacaaggaagttttgctgttggtggcgaaggccg agatttggaaatcacgggtctacaccaacagctggcagcgttattgatgctcaaggatgc cttgaattccgaaaacatcgaacttcaagctcggatcaagggcttggaggaagaaagatc tcgaagaagtcccgcctgttcttgcgtcatttgtatggagaatttggcgaatgtggtttg cttgccatgcaaacatttggctatttgcagcttctgtagcaagcatagctatgatgaagg aagtgcttgccctatctgccgtggcaacatcactgatcgcatggtgatctacatgccctg acaatgcctgacgctgttgcaggctgtccccaggatcctgccgtacaaaggcctaaggaa tttgatccgaactccagataaaccaaatgggaatgg

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