Breviolum minutum: v1.2.032547.t1
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Entry
v1.2.032547.t1 CDS
T04349
Symbol
symbB.v1.2.032547.t1
Name
(OIST) -
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
smin
Breviolum minutum
Pathway
smin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
v1.2.032547.t1 (symbB.v1.2.032547.t1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smin03041
]
v1.2.032547.t1 (symbB.v1.2.032547.t1)
03009 Ribosome biogenesis [BR:
smin03009
]
v1.2.032547.t1 (symbB.v1.2.032547.t1)
Enzymes [BR:
smin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
v1.2.032547.t1 (symbB.v1.2.032547.t1)
Spliceosome [BR:
smin03041
]
Complex A
U2 snRNP components
U2 related factors
v1.2.032547.t1 (symbB.v1.2.032547.t1)
Complex B
v1.2.032547.t1 (symbB.v1.2.032547.t1)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
v1.2.032547.t1 (symbB.v1.2.032547.t1)
Ribosome biogenesis [BR:
smin03009
]
Eukaryotic type
90S particles
Helicases
v1.2.032547.t1 (symbB.v1.2.032547.t1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PPR_2
PPR_3
HA2_C
PPR_long
OB_NTP_bind
Helicase_C
PPR
DEAD
PPR_1
AAA_22
AAA_19
HA2_N
AAA_30
ABC_tran
ResIII
nSTAND3
T2SSE
AAA_7
Flavi_DEAD
GH123_cat
Pox_A32
SRP54
NACHT
Motif
LinkDB
All DBs
AA seq
1330 aa
AA seq
DB search
TVSTTLGVWQDVKEALVEMTQASAELRRERKADEKTDRFNRMLDLCAAAEDLHGAERIFQ
RLVKDKEAPNHLSFALLVAASAEVRDIMRAEMWLQRFTRAKLDAAIQQHPKVVQSLLAAG
AGNMVEGEGHELQSSSLRFSSLIAAFKGRASRIDDGKFREIEEAFQEALSGSQSNVTKHL
YQEFLSFLACSGRTDQIQPRLQEMKISGVLPDAVTYGIIINALATKRHNKDFATSFFRQA
EQEAIQPTLPLFNSMLKASATAADLEAAKALFEKIYGASLKPNSISFNNLLSACAMAGSA
SEARVVLEKMANAGVAPDGFSYLWMIKATSRQGGEAAEKVLEEARQRGVGVDTGMYNAVF
RAYLGENHEKPQEVKRLFAEMQEAKVQPNAMSYLALANAYAMQNEVERAEDFIFQARQEG
GDRHRPEFYACLLLAYARKRGSRSIKAERTFRELVAADVRPSSQMVRYLRMAMEPEQADA
LLVDLGLEHLHKEDVTKTDQTVHPFAPLALSRLPLGLNSFSKAMSVFTIVTFATMGSDRS
SHLVEMNSDFYYEGYRYYYYPAYLYARTSDVCSHKLCLQKRRVSSVRKSETGRRHRAVRQ
GLTPMAQKATRKLLAACRHLCEALAKVGPAQREAVITDLSQGLRQELICMREAQKNRLHC
SKQGSSRTIGSGQNDWHLDGLREPDFCAKTVEKPTVNPLTERPFSDRYYEILEKRQKLPA
WEARKEFLKLIKRNQTVVLVGETGSGKTTQLPQFLLEAGYHMAGDKPKGIACTQPRRVAA
MSVAQRVADELDTMLGSHVGYLIRFEDKTSTETILKFLTDGMLLREAMTDPLLTKYSVII
LDEAHERTLATDVLFGLIKEVMKRRPDLKLVVMSATMDAQKMQGYFDNAPLLNIPGRTHP
VEIFYTSGPERDYLEAAMRTVVQIHNSEPEGDILLFLTGEEEIEQACRQLRKESSRFPEN
GELVAVPLYSSLPPMQQQKIFEPAPGPRFPGAPSGRKVVVATNIAETSITIDGIVYVVDP
GFAKQKVYNPRIRVESLLVSPVSKASAAQRAGRAGRTRPGKCFRLYTEKAFTTELTEQTY
PEILRSNLGVVVLTLKKLGIDDLVHFDFLDPPAPETMMRALEMLNFLNHLNDDGDLTDAG
DQAAEFPLDPQLAKMLIDSPKFKCSNEILSISSMLSVPNVFVRPKEFGKEADDAKNRFTH
LDGDHLTLLNVFHAYKQYTTEGADPAQFCYDSYINARSMKSAENVREQLKRTMERLQLPM
VSTDFRDKEYYPNIRKCLVAGYFMQVAHLETSAHYLTVRDNQVVALHPSTGITHKPEWVL
TSVVFFRLDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gaaccgtgtccaccaccttgggagtttggcaggatgtgaaggaagcgcttgtcgagatga
cgcaggcaagtgccgagttgcgtcgtgaacgtaaagcagatgaaaaaacggatcgtttca
atcgcatgctggacttgtgtgcagcagctgaagaccttcatggtgcggagcgtatttttc
aacgacttgtgaaggataaagaagcgcccaaccatttgagtttcgcactcctggtggcgg
ccagtgcagaggtgcgagacattatgcgcgctgagatgtggttgcagaggttcacacgcg
cgaagttggatgcagcgattcagcaacatccgaaagtggttcaaagcttgttggcagcgg
gggctgggaacatggtggaaggtgaaggacatgagcttcaaagttccagtcttcgctttt
catctttgatagctgcatttaagggtcgagcttcccgtattgatgatggcaagtttcgtg
aaattgaagaagcctttcaggaagccttgagtggatcccagagtaatgtgaccaagcatc
tctaccaagagtttctgagctttttggcttgttctggacggactgatcagatccaaccta
gattgcaagaaatgaaaatctcgggagttctgccagatgcagtgacctatggtatcatca
tcaatgccttggcaaccaaacgccacaacaaagactttgcgacgagttttttccgtcaag
cagagcaagaggcaatccagccgacacttccactcttcaactcaatgctgaaagcctctg
ctactgcagccgatttagaagccgcaaaagcattgtttgagaagatatatggagcatcat
tgaaacccaacagcatttcatttaacaatttgctgagtgcctgtgctatggcaggaagtg
catcagaagctcgggtggttttggagaagatggccaatgccggagtagctccagatggtt
tcagctatctttggatgattaaagcaacaagtcgtcaaggtggagaggctgcagagaaag
ttttggaggaggcacgacagcgtggtgtaggagtggatactggaatgtacaacgccgttt
tcagggcgtatcttggggagaatcacgagaagccacaggaagtgaaacgactttttgcgg
agatgcaggaggctaaagtgcaacccaacgccatgtcttatttggccctggccaacgcgt
atgccatgcaaaatgaagtggagcgagcagaagactttatttttcaagctcggcaggaag
gaggagatcgacatcgtcctgaattctatgcctgtttgctactggcctatgcgcggaagc
gtggaagcaggagcatcaaagcagaacgtacttttcgagaactggtagccgctgacgtac
gcccaagcagccaaatggtgcgctacttgcggatggcaatggaacctgagcaagcagacg
ccttgttggtagacttggggcttgaacatctgcacaaagaagatgtgacgaaaacagacc
aaacggtgcatccttttgcaccacttgccctctctcgccttcccttgggtttgaacagct
tttcgaaagccatgtcggtcttcaccattgtcacctttgccactatgggatcagatcgca
gcagccacttggtagagatgaacagcgacttctactacgagggatatcgatactattatt
atccagcatatctctacgccagaacctcagatgtttgttcccacaagctctgtttgcaga
agcgtcgagtctcttccgttcgaaagtctgagacaggccgtagacatcgtgctgtgcgcc
aggggctgacacctatggcccaaaaggcaacaagaaagctgttggcagcctgcaggcacc
tgtgcgaggccttggccaaagtgggcccagcccaacgggaagctgttattaccgatctca
gccagggcttgagacaagagctgatttgcatgagagaggcgcagaagaaccgtttacact
gttcaaaacaaggaagctcaaggacaataggatctggtcagaatgattggcacttagatg
ggcttcgcgaacctgatttttgtgccaaaacagtggaaaaacctactgtcaatcctttga
cagagaggcccttctctgaccgttactatgagattctggagaagcgacaaaagctgccag
cttgggaagccaggaaagagttcctcaagctgatcaagcgcaatcagactgtcgtgctgg
ttggtgaaacagggtctggaaagaccacccagttgccacagttcttgctggaggcaggct
atcatatggccggagacaagcccaaaggcatagcttgtacacagcctcgacgtgtggcgg
caatgagtgtggctcagcgagtggcagatgagttagataccatgttgggctcccacgtgg
gatacctcattcgatttgaggacaagacctctacagagactatcttgaagttcctgacgg
atggtatgcttttgcgcgaagccatgactgatcctttgctgacaaagtacagcgttatta
ttttggatgaagcacatgaacgaacactggcaacagatgtgctctttgggctcatcaaag
aggtgatgaaacgaagacctgatctcaagctggtggtgatgtctgcgacaatggatgcac
agaagatgcagggttactttgacaatgcaccgctgttgaatatccccggcagaacgcacc
cggtggagatattttacacctcggggccagagagagactacttggaagctgcaatgcgaa
cggttgtgcagattcataactccgagcccgaaggtgacatcttactgtttctaactggcg
aagaggagattgaacaagcttgccgacagttgaggaaagaaagttcccgctttcctgaga
atggagaactagtcgctgtacctctttattcctccttgcctccaatgcaacaacaaaaga
tctttgaaccagcacctgggcctcgcttccctggagctccatctggaaggaaggtggtag
ttgccaccaacattgcagaaacgtccatcacaattgatggcatcgtctatgtggtagatc
cgggctttgccaagcaaaaggtctacaaccctcgaattcgtgtggagtccttgttggttt
cgcccgtctcaaaggcttctgcagcacagcgagcaggccgtgcggggaggacacgacctg
gaaaatgcttccgtctctacactgagaaggccttcacgacagagctgacggagcaaacat
atccagagatcttgcgctccaatctgggcgtggtggtgttgaccttgaagaaattgggca
ttgatgatttggttcactttgactttttggacccaccagcaccagagactatgatgcgag
cactggagatgttgaactttctgaaccacttgaatgatgatggagacctaacagatgctg
gtgaccaagcagcagagtttccattggatccacagctagccaagatgttgattgactcgc
ccaagttcaagtgcagcaatgaaatcctttccatttcttctatgctatcggtgccaaatg
tctttgtcagaccgaaggaatttgggaaggaagcggatgatgccaaaaatcgcttcactc
acttggatggggatcacctcacgcttctcaacgttttccatgcgtacaagcagtacacga
ctgagggcgctgatcctgcgcaattctgctatgacagctacatcaatgcgaggtccatga
aatcagctgaaaacgtccgagagcagttgaagcgaaccatggagcgattgcagctgccca
tggtcagcacagacttcagggacaaggagtactatcccaacatcagaaaatgccttgtgg
ctggatacttcatgcaagttgctcatttggagacgagcgcccactatttgacagttcgtg
acaatcaggtcgtggcacttcatccatcaactggcattactcataaaccagaatgggtgt
tgacctcagtcgttttttttcgacttgacgactagttttctcaagtcgagctgaggtctt
gtaccatgagtttgtgttgacgtccatgaatttcatccgaacggtgactcaagttcgtgg
cgagtggctactggagatagcgcccagctactacgatgtgaggaatttccccaaatcaga
agcgaagacgcagctggagcgattgcaggcaagaaaaggcacacctcagcatcaatgatg
atagcgagaaaatagtgcaga
DBGET
integrated database retrieval system
