Sphaerotilus microaerophilus: CATMQ487_10540
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Entry
CATMQ487_10540 CDS
T10131
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CATMQ487_10540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smio03021
]
CATMQ487_10540 (rpoB)
03400 DNA repair and recombination proteins [BR:
smio03400
]
CATMQ487_10540 (rpoB)
Enzymes [BR:
smio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CATMQ487_10540 (rpoB)
Transcription machinery [BR:
smio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CATMQ487_10540 (rpoB)
DNA repair and recombination proteins [BR:
smio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CATMQ487_10540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BDI04084
UniProt:
A0ABM7YI82
LinkDB
All DBs
Position
1202473..1206600
Genome browser
AA seq
1375 aa
AA seq
DB search
MAQATPYSYTERKRIRKSFGKRASVLNVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAA
FLSAFPIVSHNGMVEMKFLEFNIAKPPFDVRECQQRGLTFAAAVRARLQMIIYDREASTS
QSKVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILAHFFVNDH
FRLMDTGAQMELVPERLKGEIARFDITDKAGNVLAEKDKRITAKHIRQLEASGTQFISVP
EDFLVGRVVARNMVDADTGEIVAKANEELTEALLKKLRAAGIKELPCLFTNELNQGAYIS
QTLASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYSADTYDLSRVGRMKFNAR
VGREGSEGPMTLGNDDILAVVKILVSLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGL
ARIEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKR
RVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLE
TPYRRVKDGIASTQIDYLSAIEEGKYVIAQANAKLDGDNRLIDELVSAREKGDSVLTSPE
RIQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKAFVGTGVERVA
AVDSGTVVTARRGGVVDYVDTNRIVIRVNDAETVAGEVGVDIYNLIKYHRSNQNTNIHQR
PIVSRGHMVGAGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRY
TSIHIEELVVMARDTKLGPEDITRDIPNLSEQQLGRLDEAGIVYIGAEVSPGDVLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQI
IDDELKRFRLDLNDQLRIVESDAFDRIEKLLIGKVVNGGPRKIAKGTVIDKAYLTEVEKY
HWFDIRPAEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEV
HLGWAGKGIGQRIGDMLQQEARVAELRQFFDQLYNQSGGRTEDLDALTDTEVVEMAHNLS
KGVPFATPVFDGAKEEEIRAMLKLAYPDDIAKKKGLTETRTQAYLYDGRTGEAFERPTTV
GYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVL
QEMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIELERN
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaccccctacagctacaccgagcgcaagcgaatccgcaagagctttggc
aaacgcgcgagtgtgctgaacgttccctatctgttgacgatgcagaaggacagctatgtg
gctttccttcagaaggacgttccaccccagaagcgcaagcccgagggcttgcaggcagcc
ttcctctccgccttcccgatcgtgtcgcacaacggcatggtcgagatgaagttcctcgag
ttcaacatcgcgaagccccccttcgacgtgcgtgagtgccagcagcgcggcctcaccttc
gcggcagcggtgcgtgcgcgcctgcagatgatcatctatgaccgtgaggcctcgacctcg
cagtccaaggtggtcaaggagatcaaggagcaggaggtctacatgggcgaggtgcccctg
atgaccgactacggctccttcatcgtcaatggcaccgagcgcgtcatcgtcagtcagctg
caccgctcgcccggcgtgttcttcgagcacgacaagggcaagacgcactcgtcgggcaag
ctgctgttctcggcacgcatcatcccctaccgcggctcctggctggacttcgagttcgac
ccgaaggacattctgtacttccgtgtcgaccgccgccgcaagatgccggtcacgatcctg
ctcaaggccatcggcctgaaccccgagcagatcctggcgcacttcttcgtcaacgaccat
ttccgcctgatggacacgggcgcacagatggagctggtgcccgagcgcctgaagggcgag
atcgcacgcttcgacatcaccgacaaggcgggcaatgtcctggccgagaaggacaagcgc
atcaccgccaagcacatccgccagctggaggcctcgggtacgcagttcatcagcgtgccg
gaagacttcctggtgggccgcgtggtggcgcgcaacatggtcgacgcggacaccggcgag
atcgtggccaaggccaacgaggagctgaccgaggcgctgctgaagaagctgcgcgccgcg
ggcatcaaggagctgccctgcctgttcaccaacgagctgaaccagggcgcctacatcagc
cagaccctggccagcgacgagacggccgaccagttggccgcacgcgtggcgatctaccgc
atgatgcgccccggcgagccgccgaccgaggatgcggtcgaggccctgttccatcgcctg
ttctacagcgccgacacctacgacctctcgcgcgtgggccgcatgaagttcaacgcccgc
gtcgggcgtgagggctccgaagggccgatgacgctgggcaacgacgatatcctcgccgtc
gtcaagatcctggtcagcctgcgcaacggcaacggcgaagtcgacgacatcgaccacctg
ggcaaccggcgcgtgcgctgcgtgggcgaactggccgagaaccagtaccgctcgggcttg
gcgcgcatcgagaaggccgtgaaggagcgtctgggccaggccgagaccgaggccctgatg
ccgcacgacctgatcaactcgaagcccatcagcgctgcgctgaaggagttcttcggggcg
agccagttgtcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgt
cgcgtctcggccctgggcccgggcggtctgacccgcgagcgcgccggcttcgaagtccgc
gacgtgcacccgacccactacggccgcgtgtgcccgatcgagacgcctgaaggcccgaac
atcggcctgatcaactcgctggccctgtacgcccgtctgaacgaatacggcttcctggaa
acaccgtaccgccgggtgaaggacggtatcgcgtcgacccagatcgactacctgtcggcc
atcgaggaaggcaagtacgtcatcgcccaggccaacgccaagctggacggcgacaaccgc
ctgatcgacgagctggtctccgcccgtgaaaaaggcgactcggtgctgacttcgccggag
cgcatccagtacatggacgtggcgccgacgcagatcgtctccgtggcggcttcgctggtg
cccttcctggagcacgatgacgcgaaccgcgcactgatgggcgccaacatgcagcgccag
gccgtgccgacgctgcgtccggagaaggccttcgtgggcaccggtgtcgagcgcgtcgcc
gcggtcgactcgggcaccgtcgtgaccgctcgccgcggtggcgtggtggactacgtcgac
accaaccgcatcgtgatccgcgtgaacgacgcggaaacggtggccggtgaagtgggcgtg
gacatctacaacctcatcaagtaccaccgttccaaccagaacaccaacatccatcagcgt
cccatcgtcagccgtggccacatggtcggtgcgggcgacgtgatcgccgatggcgcctcg
accgacctgggtgaactggcgctgggccagaacatgctggtcgcgttcatgccctggaac
ggctacaacttcgaggactcgatcctgatctcggagcgcgtcgttgccgaagaccgctac
acctcgatccacatcgaggagctggtcgtcatggcgcgtgacaccaagctcgggcccgag
gacatcacccgcgacatcccgaacctgagcgagcagcaactgggtcgcctggacgaggcg
ggcatcgtctacatcggcgccgaggtcagcccgggcgacgtgctggtcggcaaggtcacg
cccaagggcgaaaccacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcctccgatgtgaaggacacctcgctgcgggtcgaccagggcaccaacggcacggtc
atcgacgtgcaggtcttcacccgtgagggcatccagcgcgacaagcgtgcccagcagatc
atcgacgacgagctgaagcgcttccgcctggacctgaacgaccagctgcgcatcgtggag
tcggacgccttcgaccggatcgagaagctgctgatcggcaaggtggtcaacggtggtccg
cgcaagatcgccaagggcaccgtgatcgacaaggcctatctgaccgaggtcgagaagtac
cactggttcgacatccgcccggccgaggacgaggtggccaaccagctggagtcgatcaag
aactcgctggagcagacgcgccacagcttcgacctggctttcgaagaaaagcgcaagaag
ctgacgcagggcgacgaactgcccgccggcgtgctgaagatggtcaaggtctacctggcc
gtcaagcgccgcctgcagcctggcgacaagatggccggccgccacggcaacaagggtgtg
gtgtccaagatcaccccgatcgaggacatgccttacatggccgacggcacccctgccgac
atcgtgctgaacccactgggcgtgccttcgcggatgaacgtgggccaggtcctggaagtg
cacctgggctgggccggcaagggcatcggtcagcgcatcggcgacatgctgcagcaggag
gcccgcgtggccgagttgcgccagttcttcgatcagctctacaaccagtcgggcggccgc
accgaggacctggatgccctgaccgacacggaagtggtcgagatggcgcacaacctgtcc
aagggcgtgcccttcgccaccccggtgttcgatggcgccaaggaagaggaaatccgcgcc
atgctgaagctggcgtatccggacgacatcgccaagaagaaggggctgaccgagacgcgt
acccaggcctatctgtacgacggccgcaccggcgaggccttcgagcgtcccactacggtc
ggctacatgcacgtgctgaagctgcatcacctggtggacgacaagatgcatgcccgctcg
accggcccgtactcgctggtgacgcagcagccgctgggcggcaaggcccagttcggtggc
cagcgcttcggtgaaatggaagtctgggcgctggaagcctacggcgcggcttacgtgctg
caggaaatgctgaccgtgaagtccgatgacgtgaacggccgcaccaaggtctacgagaac
atcgtcaagggtgagcactcgatcgacgcgggcatgcccgagtcgttcaacgtgctggtc
aaggaaatccgttcgctcggtatcgacatcgagctcgagcgcaactaa
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