Sphaerotilus microaerophilus: CATMQ487_10550
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Entry
CATMQ487_10550 CDS
T10131
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CATMQ487_10550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smio03021
]
CATMQ487_10550 (rpoC)
03400 DNA repair and recombination proteins [BR:
smio03400
]
CATMQ487_10550 (rpoC)
Enzymes [BR:
smio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CATMQ487_10550 (rpoC)
Transcription machinery [BR:
smio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CATMQ487_10550 (rpoC)
DNA repair and recombination proteins [BR:
smio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CATMQ487_10550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDI04085
UniProt:
A0ABN6PGG8
LinkDB
All DBs
Position
1206616..1210845
Genome browser
AA seq
1409 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRQEYGDEFVALM
GAEGIKHLLEDMDSDAEIDKLRNDMTGSELKIKKNSKRLKVMEAFKKSGIKPNWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKLMALELFKPFIFSRLEAMGIASTIKQAKKEVEAGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEARA
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERINGKGEGMIFSDVGEVQRALDNGVI
ELTAKINVRLTEYSRSESGAWLPTTKLTETTVGRALLSEILPKGLPFTNMNKALKKKEIS
RLINTSFRKCGLKETVVFADKLLQSGFRLATRAGISIAIDDMLVPKEKPGLIERAENEVK
EIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMQQLSKQKVMDRHGKEVDQESFNSI
YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKG
LADTALKTANSGYLTRRLVDVTQDLVVNQDDCGTDNGIAMRALVEGGEVIESLRDRILGR
VTAVDVIHPENQETLIRGGMMLDEEAMDILEAAGVDEVKVRTPLTCDTRFGICAKCYGRD
LGRGGLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVDAKSEGYIGFNS
TMRYVTNAKGELVVISRSGEIIISDQHGRERERHKVPYGATLNIKADQHIKAGTVLGNWD
PLTRPIITEFAGKMRFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLLD
ASGHEVKIPGTDHSVTIGFPVGALIQVRDGQDVMPGEVLARIPVEGQKTRDITGGLPRVA
ELFEARSPKDKGILAEMTGTVSFGKETKGKVRLQITDPDGKVYEELVPKEKNILVHEGQV
VNKGENIVDGPADPQDILRLLGVEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRR
VQIVNPGDSTYIAGEQVERSELFDTNDRLRGEDKIPATYSDVLLGITKASLSTDSFISAA
SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKEEMDDNERRLI
AMQEAQDAFAAVDAETAAAAASGDLANED
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactactcgaccttttcaagcagttcacccccgacgaacacttcgacgcgatc
cgcatcgggctggccagcccggagaagatccgctcgtggtccttcggcgaggtgaagaag
cccgagacgatcaactaccggacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggtgtgatctgcgagaagtgcggcgtcgaagtgacccagaccaaggtccgccgtgac
cgcatgggccacatcgagctggcagcaccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtggtggaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgcgaagcgccaggagtacggcgacgagttcgtcgcgctgatg
ggcgccgagggcatcaagcacctgctggaggacatggacagcgatgcggagatcgacaag
ctccgcaacgacatgaccggctccgagctgaagatcaagaagaactccaagcgcctgaag
gtcatggaggccttcaagaagtcgggcatcaagcccaactggatggtgctggaagtcctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccggaacaaccgcctggctcgcctg
ctggagctgaaggcgccggaaatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcc
gtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggtgcgaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagtcaggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactcgggtcgttccgtcatcaccgtgggcccgtacctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgcctggaagcgatgggcatcgcctccacgatcaagcaggcgaagaaggaagtggaa
gccggcacgccggtggtgtgggacatcctggaagaggtgatcaaggagcaccccgtcctg
ctgaaccgcgcaccgacgctgcaccgactgggcatccaggccttcgagccggtgctgatc
gaaggcaaggccattcagctgcatccgctcgtctgctcggccttcaacgccgacttcgac
ggtgaccagatggccgttcacgtgccgctgtccatcgaagcgcagatggaagcgcgcgcc
ctgatgctggcgtcgaacaacgtgctcttcccggcctcgggcgagccgtcgatcgtgccg
tcgcaggacgtggtgctgggcctgtactacgccacccgcgagcgcatcaacggcaagggt
gaaggcatgatcttctccgacgttggcgaagtgcagcgcgcactggacaacggcgtgatc
gagctgaccgcgaagatcaatgtccgcctgaccgagtacagccgcagcgagagcggtgcc
tggctgcccacgaccaagctgaccgagaccacggtcggccgtgccctgctgtccgagatc
cttccgaagggcctgccgttcaccaacatgaacaaggcgctgaagaagaaggagatctcg
cgcctgatcaacacctccttccgcaagtgcggcctgaaggagaccgtggtgttcgccgac
aagctgctgcaaagcggcttccggctggccacgcgcgcaggcatctcgattgccatcgat
gacatgctggtgcccaaggagaagcccggcctgatcgagcgcgccgagaacgaggtcaag
gagatcgagcagcagtacgtctcgggcctggtgaccgccggcgagcgctacaacaaggtc
gtggacatctggggcaagaccggcgacgaagtcggcaaggtcatgatgcagcagctgtcc
aagcagaaggtgatggaccgccacggcaaggaagtggaccaggagtcgttcaactccatc
tacatgatggctgactccggggcgcggggttccgccgcccagatccgccagctggcgggt
atgcgcggtctgatggccaagccggacggctcgatcatcgagacgccgatcacggcaaac
ttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgctcgaaagggc
ctggcggacacggcgctgaagaccgcgaactcgggttacctgacccgccggctggtcgac
gtgacgcaggatctggtggtcaaccaggacgattgcggcaccgacaacggcatcgcgatg
cgtgcgctggtcgaaggcggtgaggtgatcgagtccctgcgcgaccgcatcctcggccgg
gtgaccgcggtggatgtgatccaccccgaaaaccaggaaaccctgatccgcggcgggatg
atgctcgacgaagaggcgatggacatcctcgaagccgctggcgtcgacgaggtcaaggtc
cgcacgccgctgacctgcgacacccgcttcggcatctgtgccaagtgctatggccgcgac
ctgggccgcggcggcctggtcaacaccggcgaggcggtgggcgtgatcgcggcgcagtcg
atcggtgagccgggcacgcagctgacgatgcgtaccttccacatcggtggtgcggcctcg
cgtgcggcggtggcgtccagcgtggacgccaagtccgagggctacatcggcttcaacagc
acgatgcgctacgtgaccaacgccaagggcgagctggtggtgatctcgcgttccggcgaa
atcatcatctccgaccagcacggccgcgagcgcgagcgccacaaggtgccctacggcgcc
acgctgaacatcaaggctgaccagcacatcaaggcgggcacggtgctcggcaactgggac
ccgctgactcgcccgatcatcaccgagttcgccggcaagatgcgcttcgagaacgtcgag
gaaggcgtgaccgtggcgaagcaggtcgacgaggtgacgggcctgtcgaccctggtcgtg
atcgatccgaagcgccgtggcgccgccaaggtggtgcgccctcaggtcaagctgctggac
gccagcggccacgaggtgaagatccccggcaccgaccactcggtgacgatcggcttcccg
gtaggcgcgctgatccaggtgcgcgacggccaggacgtgatgcccggcgaagtgctggcg
cgcatcccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgggtggct
gagctgttcgaagcccgctcgcccaaggacaagggcatcctggccgagatgaccggtacg
gtctccttcggcaaggagaccaagggcaaggtgcgtctgcagatcaccgacccggacggc
aaggtctacgaagaactggtgcccaaggaaaagaacatcctggtgcacgaaggccaggtg
gtcaacaagggcgaaaacatcgtcgacggtccggccgatccgcaggacatcctgcgcctg
ctgggcgtcgaggaactggcacgctacatcgtcgacgaggtgcaggacgtctaccgtctg
cagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgccgc
gttcagatcgtcaacccgggcgacagcacctacatcgcaggtgagcaggtcgagcgctcg
gaactgttcgacaccaacgaccggctgcgtggcgaggacaagatccctgccacgtactcc
gacgtgctgctgggcatcaccaaggcctcgctgtcgaccgattcgttcatctccgcggct
tccttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggcaagcgcgacgag
ctgcgtggtctgaaggaaaacgtcatcgtcggtcgcctgatccccgctggtaccggcctg
gcctaccatcaggcccgcaaggccaaggaagagatggacgacaacgagcgtcgcctcatc
gccatgcaggaagcgcaagacgccttcgcggcggtggatgccgagaccgctgcggccgcg
gcttccggcgacttggcgaacgaggactga
DBGET
integrated database retrieval system
