Sphaerotilus microaerophilus: CATMQ487_12730
Help
Entry
CATMQ487_12730 CDS
T10131
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATMQ487_12730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smio03019
]
CATMQ487_12730
03009 Ribosome biogenesis [BR:
smio03009
]
CATMQ487_12730
Enzymes [BR:
smio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CATMQ487_12730
Messenger RNA biogenesis [BR:
smio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CATMQ487_12730
Ribosome biogenesis [BR:
smio03009
]
Prokaryotic type
rRNA processing factors
CATMQ487_12730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDI04303
LinkDB
All DBs
Position
1442491..1445415
Genome browser
AA seq
974 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFKEGVSVRDAKISDVISNGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEQREELKENLDQLEYPKGMSLIARTAGIGRTAPELQ
WDLNYMLKLWTAIDEASRAGRGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYEQAK
QFMNHVMPETANRVKRYRDDAALFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVAV
DVNSARATRGGDIEETATRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRFDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRIIQEETLKENTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRCTVLLVPNKHLETPN
YKLERLRHDDPRLENLSASYTMIEEPDEEVGITRREKNAKPRQEPVIKGVLPDQPAPVAA
PKPKPEPVAAPAQPVAHSAAAPASAPVATAAPAAAAGNGFFGWVRKLFGMAPTVAPEVAP
AEAVPAVQAPAAAKPAEREGREGRGERGGREGRGERRDGRGEGRGDRGERRRNGEGAKGE
ARAERQGERQGERQGERPNRGERPDRAERGERPERAEGRNGNEPRRERQVGDEAGRGPRT
DRRALATVAEGAAADVSAPAFEDTQPQGAESDADRDGRRRRRGGRSRREREEGQGRVESQ
ELNAELGAEAAVPLTQVEGTAGEAGAVPVTAVDEAAAEGADAQRDGRRRRRGRGRGREEG
EGVEGGESAAAQAQAEPAMEGAAPAAVAAQPEAIAAPVEPIVVEVAPVAAPLAVAQPYVL
PLDALAELARGAGLEWVNSDADKVRAVQEAIASEPAPVRVPRVIKPVVLIDEGPLVLVET
RRDLAGLTLPFERG
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctcatcaacgccacgcagcccgaggaaaggcgcctggcgatcgtcgac
ggccagaaactgctcgatttcgaaaccgagatcgagggccgcgaacaacgcaagggcaat
atctacaaggccgtcgtcacgcgcgtcgagccctccctggaagcgtgtttcgtcgactac
ggcgaggaccgccacggcttcctgccgttcaaggaaatctcgcgccagtatttcaaggaa
ggcgtcagcgtccgcgacgccaagatctccgacgtcatctccaacggccaggagctgctg
gtccaggtcgagaaggaagagcgtggcaacaagggcgcggcgctgaccaccttcgtcagt
ctggccgggcgctacctggtgctcatgcccaacaacccgcgcggcggcggcgtgagccgg
cgcatcgagggtgagcagcgcgaggagctcaaggagaacctcgaccagctcgaatacccc
aagggcatgagcctgatcgcccgcaccgccggcatcggccgcacggcgcccgagctgcag
tgggacctcaactacatgctcaagctgtggaccgccatcgacgaggcgtccagggccggc
cggggtgccttcctgatctaccaggaatcgtcgctggtcatccgagcgatccgggactac
ttcaccgccgacatcggcgagatcctgatcgacacggacgacatctacgagcaggccaag
cagttcatgaaccacgtgatgccggagacggccaatcgcgtgaagcgctaccgcgatgac
gcggcgctgttcagtcgcttccagatcgagcaccagatcgagacggccttcagccgcacg
gtgaacctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtcgcggtg
gacgtcaactcggcgcgcgccacccgtggcggcgacatcgaggaaaccgccacccgcacc
aacctcgaagccgccgacgagatcgcccgccagtgccgcctgcgcgacctgggcggcctg
atcgtggtcgacttcatcgacatggaagagagcaagaaccgccgcgaggtcgaacagcgc
ctgcgcgacgcgctgcgcttcgaccgtgcccgcgtgcagttcagctcgatttccaagttc
ggcctgctcgaactcagccgccagcgcctgcgcccggcgctgagcgagggctcgcacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgagtcgtcggcgctgcag
atcctgcgcatcatccaggaggagacgctgaaggagaacaccgccgccgtgcacgtgcag
gtgccggtggaggtgaccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gagctcaagcagcgctgcacggtgctgctggtgcccaacaagcacctggagacgccgaac
tacaagctggagcgcctgcgccacgacgacccgcgtctggagaacctcagcgccagctac
acgatgatcgaggagccggacgaggaagttggtatcacccggcgcgagaagaacgccaag
ccccggcaggagccggtcatcaagggcgtgctgcccgaccagccggcgcccgttgcggcg
cccaagcccaagcccgagccggtcgctgcgccggcccagccggtggcccattcagctgcg
gctcccgcgtcggcaccggttgccaccgccgcgccggcggctgcggctggcaacggcttc
tttggctgggtgcgcaagctcttcggcatggcgccgacggtggcgcccgaggtggctccg
gccgaagcggtgccggcggtacaggccccggctgcggcgaaaccggccgaacgcgagggc
cgtgaaggccgtggcgagcgcggtggccgcgaaggccgcggtgaacgcagggacggccgc
ggcgagggccggggtgaccgaggcgagcgccgccgcaacggcgaaggcgccaagggcgag
gcccgcgccgagcgtcagggtgagcgccaaggagaacgccaaggagagcgcccgaatcgt
ggtgaacgccccgaccgggctgaacgtggtgagcgtcccgaacgcgctgagggccgcaac
ggcaacgagccgcgccgcgagcgccaggtaggcgacgaggccggccgcggtccgcgcacc
gaccggcgtgcgctggccaccgtcgccgagggggcagcagcagacgtgtctgcaccggcc
ttcgaggacacccagccgcagggcgccgagagcgatgcagaccgggacggccgccgccgc
cgccgcggtggccgctcgcgccgcgagcgcgaggaaggccagggccgcgtcgagagccag
gagctgaacgccgaactgggcgccgaggccgccgtgccgctgacgcaggtcgaaggcacc
gctggcgaggccggggccgtaccggtgacggcggtggacgaggcggctgccgagggcgct
gatgcacagcgcgacggccgccgccgccgccgtggccgcggtcgcggccgtgaggagggc
gagggcgtcgagggtggcgagtccgctgccgcacaggcacaggccgagccggccatggaa
ggcgctgcgcctgccgcggtggctgcccaacccgaggccatcgccgctccggtcgagccc
atcgtggtcgaggttgcgccggtggccgcgccgctcgccgtggcgcagccctacgtgctg
ccgctggatgccctggccgaactggcgcgcggcgccggcctggaatgggtcaacagcgat
gccgacaaggtccgtgcggtgcaggaggcaattgcctccgagccagcgcccgtgcgcgtg
ccgcgggtgatcaagccggtggtgctgatcgacgaaggcccgctggtgctggtcgagacg
cgccgcgatctggccggcctcaccctcccgttcgagcggggctga
DBGET
integrated database retrieval system
