Sphaerotilus microaerophilus: CATMQ487_13000
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Entry
CATMQ487_13000 CDS
T10131
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATMQ487_13000 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smio03019
]
CATMQ487_13000 (rhlE_1)
Enzymes [BR:
smio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CATMQ487_13000 (rhlE_1)
Messenger RNA biogenesis [BR:
smio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CATMQ487_13000 (rhlE_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDI04330
UniProt:
A0ABM7YJ71
LinkDB
All DBs
Position
complement(1470600..1472069)
Genome browser
AA seq
489 aa
AA seq
DB search
MITETPTAAEQTAAPSRFDTLALAPKLLQAIQDAGYETMTPIQAKAIPIVLDGKDVMGAA
QTGTGKTAAFSLPLLQKMLAHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQ
LRVTCVFGGIDMAPQTAELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLD
IGFLPDLQRILSFLPKKRQTLLFSATFSTEIKRLAQSYLQDPVLVEVARPNATASTVEQR
FYSVSDDDKRSAVRHILRERSLAQAIVFVNSKLGAARLARSFERDGLNTAALHGDKSQDE
RLKALDAFKRGEVDLLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASG
LAVSLVTREDARLVGDIEKLIRKKIDLEALELDDERPRRRRPEGWAGDEAPRSEGSSFGS
PAARRPPPPPARQASTDPFFDRPYEADPNATPVWEKSDAAAVPSSRTTLSRYIKPRRKVA
TLLGGKPST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacagagactcccaccgcagccgagcagacggccgccccctcccggttcgatacc
ctcgcactggcccccaagctgctccaggccatccaggacgccggctacgagacgatgacg
ccgatccaggccaaggcgataccgatcgtcctggacggcaaggacgtgatgggcgccgcc
cagaccggcacaggcaagacggcggcgttctcgctgcccctgctgcagaagatgctggca
cacgaaaacgccagtgcgtcaccggcacggcatccggtgcgcgccctggtgttggccccc
acacgtgagctggccgaccaggtcgccaacaacgtcaagacctacgcccggcacagccag
cttcgtgtgacctgcgtgttcggcggcatcgacatggcgccacaaacggctgaactcaag
cgtggcgtcgaggtcctgatcgccacaccgggtcggctgctggaccacatccaggcgaag
aattgccagctcaaccaggtcgagtacgtggtgctcgacgaggcggaccggatgctcgac
atcggcttcctgcccgatctgcagcgcatcctgagcttcctgccgaagaagcgccagacc
ctgctcttctcggccacgttctcgactgagatcaagcgcctggcgcagagctacctgcag
gaccccgtactggtcgaggtagcccgaccgaacgccaccgcatccaccgtcgaacaacgc
ttctacagcgtgtcggacgacgacaagcgcagtgccgtgcgccacatcctgcgcgaacgc
tcactcgcccaggccatcgtcttcgtgaactccaagctgggcgctgcgcgcctggcccgg
tcattcgaacgcgacggtctcaacaccgcagcattgcacggcgacaagtctcaggacgag
cgcctgaaggccctcgacgccttcaaacgtggcgaggtcgacctgctggtcgcgaccgac
gtggcagcacgtggcctggacatcgccgatctgccggcggtgttcaacttcgacatcccg
ttcaatgccgaggactacgtgcaccgcatcggccgtaccggccgtgccggcgcctcggga
ctggcggtgtcgctggtgacccgggaagacgcccgcctggtgggcgacatcgagaagctc
atccgcaagaagatcgacctcgaagcgctggagctggacgacgagcggccgcgccgccgc
cgccctgagggctgggcgggggacgaggcgccacgctccgagggcagcagcttcggcagc
ccggcggcccggcgcccgccgccccccccggcgcgacaggcgagcacagaccccttcttc
gaccgcccctacgaggccgatccgaacgccactcccgtctgggaaaaatccgacgcagcg
gcggtgccgtcttcgcggacgaccttgtcgcgctacatcaagccacgccgcaaggtcgct
acgctgctgggcggcaagccgtcaacctga
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