Sphaerotilus microaerophilus: CATMQ487_30920
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Entry
CATMQ487_30920 CDS
T10131
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smio Sphaerotilus microaerophilus
Pathway
smio03410
Base excision repair
smio03430
Mismatch repair
smio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CATMQ487_30920 (recJ)
03430 Mismatch repair
CATMQ487_30920 (recJ)
03440 Homologous recombination
CATMQ487_30920 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smio03400
]
CATMQ487_30920 (recJ)
DNA repair and recombination proteins [BR:
smio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CATMQ487_30920 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CATMQ487_30920 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CATMQ487_30920 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PIGA
Motif
Other DBs
NCBI-ProteinID:
BDI06122
UniProt:
A0ABM7YNP8
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All DBs
Position
3633872..3635608
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AA seq
578 aa
AA seq
DB search
MNPTIAVRDVPPRAAWALEQAGVHPLLARLFAARGIRSAQELDDGLAKLIPPAELKGADA
AARLLADTLDSGRPIVVVADYDCDGATACAVALRGLAMLGARPGTLHYVVPDRAIHGYGL
TPAIVDLAMAHRPALLVTVDNGIASHAGVAHARALGLKVLVTDHHLPAAGPDGVPTLPAA
DVIVNPSQPGCGFESKSLAGVGVMFYVLLALRAELRARGAFDASNQPKLDALLDLVALGT
VADVVRLDANNRRLVAQGLKRIRAGRMQAGVAALFAAAGRSAQRASAFDFGFALGPRLNA
AGRLADMTLGIECLLTDDAGRAAELARQLDAINRERREVEAGMREQAEALLDLLMPTVAG
EAGTPPPAVVLFDPDFHEGVVGIVAGRVKDRLHRPTFVFAIGADGLLKGSGRSIPGFHLR
DALDLVAKRHPEVLKKFGGHAMAAGCTMAEEDFDTFDAAFQQVAREWLDPAALQRQIATD
GPLAAEYFQPATIALLDAQVWGQAFEAPVFTDEVEIVNQRLVGEKHLKLSVRHAGQLRDA
IWFGQSQPLPAKVRLAYRISLDEYQGRQRVQMVVEGVG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgacgattgccgtgcgcgacgttccccctcgcgccgcttgggcgctggagcag
gccggcgtgcacccgctgctcgcccgcctattcgccgcccgcggcatccgcagcgcccag
gagctggacgacggcctggccaagctgatcccgcccgccgaactcaagggcgcggacgcc
gccgccaggctgctggccgataccctggacagcggccgcccgatcgtcgtcgtggccgac
tacgactgcgacggcgccaccgcctgcgccgtcgcgctgcgcggcctggcgatgctcggg
gcccggcccggcaccttgcactacgtggtgcccgaccgcgccatccacggctacggcctg
acgccagcgatcgtcgacctggccatggcgcaccgcccggccctgctggtcaccgtggac
aacggcatcgccagccacgccggcgttgcccacgcccgtgcgctgggcctgaaagtgctg
gtcaccgaccaccacctgcccgccgcggggccggacggcgtgcccacgctcccggccgcg
gacgtcatcgtcaaccccagccagcccggctgcggcttcgagagcaagtcgctcgccggc
gtgggcgtgatgttctacgtgctgctcgccctgcgcgccgagctgcgcgcgcgcggcgcc
ttcgacgccagcaaccagcccaagctggacgccttgctcgacctcgtggcgctgggcacc
gtggccgacgtggtccggctcgacgccaacaaccgccgcctcgtcgcccagggcttgaag
cgcatccgcgccgggcgcatgcaggccggcgtggctgcgctcttcgccgccgccggccgc
agcgcccagcgcgccagcgccttcgacttcggctttgccctgggcccacgcctgaacgcc
gccggccggctggccgacatgacactcggcatcgagtgcctgctgaccgacgacgccggc
cgcgccgccgaactcgcccgccagctcgacgccatcaaccgcgagcgccgcgaggtggaa
gccggcatgcgcgaacaggccgaggccctgctcgacctgctcatgcccacggtggccggc
gaggccggcacgccgccgcccgccgtggtgctcttcgaccccgacttccacgaaggcgtg
gtcggcatcgtcgccggccgcgtcaaggaccgcctgcaccgccccaccttcgtcttcgcc
atcggtgcggacggcctgctcaagggctccggccgctccatcccgggctttcacctgcgc
gacgcgctggacctcgtcgccaagcgccaccccgaggtgctgaaaaagttcggcggccac
gccatggccgccggctgcacgatggcggaggaggacttcgacaccttcgacgccgctttc
cagcaggtcgcccgcgagtggctggaccccgccgcgctgcagcgccagatcgccaccgac
ggcccgctggcggccgagtacttccagcccgccaccatcgccctgctcgacgcccaggtc
tggggccaggccttcgaggccccggtcttcaccgacgaggtcgagatcgtcaaccagcgc
ctggtcggcgagaagcacctcaagctcagcgtgcgccacgccggccaactgcgcgacgcc
atctggttcggccagagccagccactgcccgccaaggtgcggctcgcgtaccggatcagc
ctggatgagtaccagggaaggcagcgggtgcagatggtggtggagggggtgggctga
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