Spiroplasma mirum ATCC 29335: SMM_0007
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Entry
SMM_0007 CDS
T03003
Symbol
dnaX
Name
(GenBank) DNA polymerase III gamma/tau subunits
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
smir
Spiroplasma mirum ATCC 29335
Pathway
smir03030
DNA replication
smir03430
Mismatch repair
smir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMM_0007 (dnaX)
03430 Mismatch repair
SMM_0007 (dnaX)
03440 Homologous recombination
SMM_0007 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smir03032
]
SMM_0007 (dnaX)
03400 DNA repair and recombination proteins [BR:
smir03400
]
SMM_0007 (dnaX)
Enzymes [BR:
smir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMM_0007 (dnaX)
DNA replication proteins [BR:
smir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMM_0007 (dnaX)
DNA repair and recombination proteins [BR:
smir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMM_0007 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNAX_ATPase_lid
DNA_pol3_gamma3
RuvB_N
AAA_5
TIP49
PIF1
AAA_22
AAA_30
AAA_19
AAA_14
Mg_chelatase
AAA_assoc_2
AAA_7
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHF60490
UniProt:
W0GJQ2
LinkDB
All DBs
Position
9189..11336
Genome browser
AA seq
715 aa
AA seq
DB search
MNYISLYRKYRPNNFDKIIGQKEIKTVLKNAIKNNTFSHAYLFSGPRGTGKTSIAKIFAK
AINCLNLVECNPCNTCEHCVEINRGSSVDIFEIDAASNNGVDEIREIKNNVQLLPTKMKY
KVYIIDEVHMLTNSAFNALLKTLEEPPHHVIFIIATTESHKVPATIISRCQKYNFKKISK
IELESNIKKILENENVKFEIPAIQQIVLLSDGSARDSLSILEQVIMFSDGAITLENVNTI
FATISKQKKLSLLKEIFEYQTNNVLLQAKEIYLSGADFELLTINMLDILKEIFEYQQTKN
SVFLSVLSEEETQIFASKLVAKELLELIDLFTEMLVKMKMNKAQDMYFELILLKALAIFE
NNKKDFADLDLTLISDNKLTGNHTDYIENKFKNININGINFDNQNHEKPLVNAENSIDNG
QHFNSDKEDIKIKEEPKIHHDFVQPNIFSFGDEEDSEVENNNIEIKIEGTIENPVSTIET
AELPEQKINESNEPINEPIIVKEEQQVTQIEALKKDHEENNVEEPKQPENIYNLNKFKDN
VKTNIDIYKFSNINYSMQQILNILVSAEKKQRERYEILFETLIKEKSKDIPLEKIISFYN
VKFVAASDQGVIIVTNTKPEANWISHEMCDWEFRNKIFQKLDFDFVIIALSETEWSDVKN
DYVKLRQAKKLPMSSIIDVEEFYQDLLVKQIDNYEEHKEAIENGKEIFDNIKIIE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaattatatatcattgtatcggaaataccgaccaaataactttgataaaataataggc
caaaaagaaattaaaacagtattaaaaaatgctataaaaaataatacattttcacatgct
tatttattttccgggcctcggggaaccggaaaaacttcaattgctaaaatttttgctaaa
gcaattaattgtttaaatttagtggaatgtaatccttgcaatacatgtgaacattgtgta
gaaattaatcgcggatcatctgttgatatttttgaaattgatgctgcttccaataatggg
gttgatgaaattcgtgaaattaaaaataatgttcaacttttacctactaaaatgaagtat
aaagtttatatcattgatgaagttcatatgctaacaaactcagcttttaatgcattgtta
aaaacattagaagaaccaccacatcatgttatttttatcatagctactactgaaagtcat
aaagttcctgcgacaattatttcacgttgtcaaaaatataattttaaaaaaatatcaaaa
attgaacttgaaagtaatattaaaaaaatcttggaaaatgaaaatgtaaaatttgaaatt
ccggcaattcaacaaattgttttattgtcagatggtagtgctcgtgattcattaagtatt
cttgaacaagttattatgttttctgatggggcaataactcttgaaaatgtaaatacaatc
tttgcaacaatttcaaaacagaaaaaattaagtttactaaaagaaatttttgaatatcaa
actaataacgttttgcttcaagccaaagaaatttatttatctggagctgattttgaacta
ttaacgattaatatgctagatattttaaaagaaatttttgaatatcaacaaactaagaat
tcagtttttttaagtgtgctatcagaagaagaaacacaaatttttgcaagtaaactagtt
gcgaaagaattattagagttaattgatcttttcacagaaatgttagtaaaaatgaaaatg
aataaagcacaagacatgtattttgaattaattcttttaaaagcattagctatctttgaa
aataataaaaaagattttgctgatttagatttgacattaattagtgataataagcttaca
ggtaatcatactgattatattgaaaataaatttaaaaatatcaatataaatggaataaat
tttgataatcaaaatcacgaaaagcctttagtaaatgcagaaaattcaatagataatggc
caacattttaatagcgacaaagaagatataaaaattaaagaagaacctaaaatacaccat
gattttgtgcaaccaaatattttttcctttggtgatgaagaagattctgaagtagaaaat
aataatattgaaattaaaatagaaggaaccattgaaaatccagtttcaacaattgaaact
gccgaactaccagaacaaaaaattaatgagtctaatgaacctattaatgaacctattata
gttaaagaagaacaacaagtaactcaaatcgaagcattaaaaaaagatcacgaagaaaac
aatgttgaggagcctaaacaaccagaaaatatttataatttaaataaatttaaagataat
gttaaaacaaatattgacatctataaattctcaaatattaattattcaatgcaacaaatt
ttaaatattttagtaagcgccgaaaaaaaacaacgtgaacgttacgaaattttatttgaa
actttaattaaagaaaaaagcaaagatattccactggaaaaaattattagtttttataat
gttaagtttgtggctgcttctgatcaaggagtaatcattgtaacaaatacaaaaccagaa
gctaactgaattagtcatgagatgtgtgattgagaattcagaaataaaatttttcagaaa
ctagattttgattttgttattattgcactaagtgaaacagaatgaagtgatgttaaaaat
gattatgtaaaattgcgacaagctaaaaaattaccaatgagttcaattattgatgttgaa
gaattttatcaagatttattagtaaaacaaattgataattatgaagagcataaagaagct
attgaaaatggtaaagaaatttttgacaacattaaaattattgaataa
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