Spiroplasma mirum ATCC 29335: SMM_0061
Help
Entry
SMM_0061 CDS
T03003
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smir
Spiroplasma mirum ATCC 29335
Pathway
smir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMM_0061 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smir03021
]
SMM_0061 (rpoC)
03400 DNA repair and recombination proteins [BR:
smir03400
]
SMM_0061 (rpoC)
Enzymes [BR:
smir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMM_0061 (rpoC)
Transcription machinery [BR:
smir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMM_0061 (rpoC)
DNA repair and recombination proteins [BR:
smir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMM_0061 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHF60537
LinkDB
All DBs
Position
64199..67954
Genome browser
AA seq
1251 aa
AA seq
DB search
MVENNKMKNGRMIKIGLANPDDIRGWSYGEVKKPETINYKTLKPERDGLFDEKIFGPTKN
FECACGKYKKSKNKGKICERCGVEITEAIVRRERMGHIELEEPVTHIWMLKAAPSRISLI
LDMKTKELEEVVYFVSYIVLDAGDAKSLRPKMVLDLGNAKTSAQTRQRLTKTLREILDTL
EPNTIAYEVGEQMIEDLKNTSLPFSMDECAQFINRHTNAKFGIGAEAIEELLKKLDIDAE
INKIKQDLKDKRTQLDQNKLMKRLEVLDSLKKSNSKPEWMILRAIPVIPPDIRPIIQLDG
GRFTTSEINDLYRRIIIRNERLKKVKAMGAPSVIVNNEKRMLQEAVDALLDNERKARPVT
GKDKRPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQCGLPRDMAITLF
KPFVIQYLVKNGIAANIKVAEKLILNQDDKVWEVLEEVIKDHPVLLNRAPTLHRLGIQAF
EPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITDEAVAEARSLMLGSRNILGPKDGK
PIVTPTQDMVLGNYYLTYEERDQLGEGSIFKDINEAIMAYETNCVALHALVAIPVKAFSN
KQFKQANMGDYLITTPGKIIFNQIFKEEFPYINEPNIENLIALAPRNMIKDNVDLHEYLV
NWKINAPFKKKDLSNIIDRYFKIYGANKTAEMLDNMKNLGFKFSGKSGVTVSAADVKVYE
HKHVEFKEADQKVQEINDYYKLGMLTAREKHTRIVNVWSRVKDNIQNELEHVLKEDPKNP
IFMMADSGARGNVSNFTQLVGMRGLMNNPKGDIIELPIKSSFREGLSVSEFFISTHGARK
GMADVALKTADSGYLTRRLVDVSQEIIVTIPDCHTRKGFMVSDIVEQKHSNIIVPLKDRL
VGRCNLRDIKLSENDIIPAATLLTEEDAARIIKAGIKEVMIRSVLTCEANKGVCQICYGK
NLATGNEVEIGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVTT
PKGSIAIISEIDGEISDIKDEGGLYIIHVKSENDERKYKTQFGAILRVKLGDKVVRGQKL
TEGSINIKELLEVAKIEDVHNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDSG
DTDLLPGEIVSIKKYRTETINAVRAMKKPPTAKHVIFGIKKAPLESESFLSSASFQDTTR
VLVKAIIKGKVDKLEGLKENIMLGHLIPAGTGLKESKEIIEAGIAARTEEY
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaaataataaaatgaaaaacggacgtatgattaaaatcggcttggcgaatccc
gatgatattcgtggttgatcttatggggaagttaaaaaacccgaaacaattaactataaa
actttaaaaccagaacgtgatggtttatttgatgaaaaaatctttggtccaaccaaaaat
tttgagtgtgcttgtgggaaatataaaaaatcaaaaaacaaaggtaaaatctgtgaacga
tgtggggtcgaaattaccgaagctatcgtgcggagagaaagaatggggcatattgaatta
gaagagccagttactcatatttggatgttaaaagcagcgccaagtcggatttccctaatt
ttagatatgaaaactaaagagttagaagaagttgtttactttgtctcttatattgtgttg
gatgctggggatgccaaatcattacgtccaaaaatggtattagatttaggaaatgccaaa
acctcagctcaaactcgccaacgtttaacaaaaactttacgcgaaatcttagataccctt
gagccaaatacaattgcttatgaagtcggtgaacaaatgattgaggatttaaaaaatact
tcattaccgttttcaatggatgaatgtgcccaatttattaatcgccatacaaatgctaaa
tttggaattggtgccgaagcaattgaagaactattaaaaaaattagatattgatgctgaa
atcaacaagattaaacaagatttaaaagataaaagaacgcaattagatcaaaataaatta
atgaaaagattagaagttttagattcattaaaaaaatcaaatagtaaaccggaatgaatg
atcttacgggcaattcccgttattccccctgatattcgtccaattattcaattagatggg
ggaagatttacaacttcggaaattaatgatttataccgtcggattattattcgtaatgaa
cggctaaaaaaagttaaagcaatgggggcacctagtgtaattgttaataacgaaaaaagg
atgttacaagaagctgttgatgctttattagataacgaacgaaaagcacgcccggttact
ggtaaagataaacgaccattaaaatcattaacaagtattttaaaaggaaaacagggacgt
ttccgtcaaaacttattagggaaacgtgttgactattcagggcgaagcgttattgcaatt
ggtccggatttaaaaatgtatcaatgtggattgccgcgtgatatggcgattaccttattt
aaaccctttgtcattcaatacttagttaaaaatgggattgccgctaatattaaagtggcg
gaaaaattaattttaaaccaagatgacaaagtttgagaagtgttggaagaagtgattaaa
gatcacccagtccttctaaaccgggcaccaaccttacaccggttaggaattcaagctttt
gaaccaaaattagtaaagggaaaagcaatcagattacatccattagtaacaactgctttt
aatgcggactttgacggagaccaaatggcggtccatgttccaattaccgatgaagcagta
gcggaagctagaagtttaatgttaggaagccgtaatattttaggaccaaaagatggaaaa
ccaattgttaccccaacccaagatatggtcctaggaaactattatttaacatatgaagaa
cgtgatcagttaggagaaggttcaattttcaaagatattaacgaagcaattatggcttat
gaaactaattgtgttgctttacatgcattggtggctattcctgttaaagcatttagtaat
aaacaatttaaacaagctaatatgggagattacttaattacaacgcccgggaaaattatc
tttaaccaaatttttaaagaagagttcccatatattaatgaaccaaatattgaaaactta
attgctttagcaccacgaaatatgattaaagataatgttgatcttcatgagtatttggta
aattgaaaaattaatgcgccatttaagaaaaaagacttatcaaatattattgatcgttac
tttaaaatatacggggctaacaaaacagcggaaatgttagacaacatgaaaaacttagga
tttaaattctctgggaaatcaggggttactgtttcggctgctgacgttaaagtttatgaa
cataaacatgttgagtttaaagaagctgaccaaaaagttcaagaaattaatgactactat
aaattaggaatgttaacggcccgagaaaaacatacaagaattgttaacgtgtgatcacgg
gtaaaagataatatccaaaatgaattagaacatgttttaaaggaagatccaaaaaatcca
atctttatgatggctgattcgggagcacggggaaacgtttcgaactttacccaactagtt
gggatgcggggattaatgaataacccgaaaggggacattattgagttaccaattaaatct
tcgtttagagaaggattatcagtgtcagagttctttatttcaacccatggggctcggaaa
gggatggccgatgttgctttaaaaacggccgactctggatacttaactcgccgtttagtt
gatgtttcccaagaaattattgtaacaattccggactgtcatactcgtaaagggtttatg
gtttcggatattgtggaacaaaaacactcaaatattattgtgccattaaaagaccggtta
gttggccgttgtaatttacgtgatattaaattatctgaaaatgatattattccggccgct
actttattaacagaagaagatgctgcacgaattatcaaagccggtatcaaagaagtaatg
attcgttcagttttaacatgtgaagctaataaaggagtttgtcagatttgttatggtaaa
aacttagcaactggaaacgaagttgaaattggagaagcagttggaacaattgcggcccaa
tcaattggagagcccggaacccagttaacaatgcgtactttccataccggaggggtggcc
ggaggggctgatattacccaagggttaccacggattaaagaattattagatgttaccaca
ccaaaaggatcaattgcgattatttcagaaattgatggtgaaattagtgatattaaagac
gaaggtggcttatatattattcatgttaaatcagaaaatgatgaacgtaaatataaaacc
caattcggtgctatcctaagggttaaacttggtgataaagtagttcgtggtcaaaaatta
actgaaggttcaattaatattaaagaattattagaagtagcgaagattgaagatgttcat
aactacattctaaaagaagttcaaaaagtttaccgtttacaagggattgaaatttctgat
aaatacattgaaattattgttaaacagatgttaaacaaagtaaaaattattgattcaggt
gacactgacttattaccaggagaaattgtttcaattaaaaaataccgtactgaaacaatt
aatgcggtacgggcaatgaaaaaaccaccaaccgctaagcatgtcatctttggtattaaa
aaagcaccattagaatcagaatcgttcttatcatctgcttcattccaagatacaacgcgt
gtcttagtaaaagcaattatcaaaggaaaagttgataaattagaaggattaaaagaaaac
attatgttaggacatttaattccagcaggaactggtttaaaagaatcgaaagaaattatt
gaagcaggaattgcggcaagaacagaagaatattaa
DBGET
integrated database retrieval system
