Spiroplasma mirum ATCC 29335: SMM_0251
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Entry
SMM_0251 CDS
T03003
Symbol
topA1
Name
(GenBank) DNA topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smir
Spiroplasma mirum ATCC 29335
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smir03032
]
SMM_0251 (topA1)
03400 DNA repair and recombination proteins [BR:
smir03400
]
SMM_0251 (topA1)
Enzymes [BR:
smir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SMM_0251 (topA1)
DNA replication proteins [BR:
smir03032
]
Prokaryotic type
DNA Topoisomerases
SMM_0251 (topA1)
DNA repair and recombination proteins [BR:
smir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SMM_0251 (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_FGT1_2
DUF3797
Zn_ribbon_RPB9
Toprim_2
DZR
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
AHF60702
UniProt:
W0GKL0
LinkDB
All DBs
Position
236933..238933
Genome browser
AA seq
666 aa
AA seq
DB search
MAGTLVILESPTKTKAVAKYLGEGYTVLSSEGHIRNLSTKGEFGLGVDIITFEPTYKIER
GKKEKVKELKTAAKSAELVILATDPDREGEAIAYHLNEVLACKDKSRRVRFNEITKDAVL
EAFQYQTDIDMNLVKSQEARRILDRFIGFRLSKLLQKKIKSKSAGRVQSVALKLIVEREK
EYQNFIPKEYWTVEGLYKKAVIKLVKYQNKKIELNNEAKVLKVKAALQKDYEVVDINKSE
RQRKSPNPHTTSTMLQEASSKLGFPSNKTSMIAQQLYEGIKVKDNLVGFITYPRTDSIRL
SEKFVQDAFNYITINYGQEYLGEVKQPSQKKKNVQDAHEAIRPTDLTMTPDLAKEYLSRD
QWRLYKIVYQRALASLMASAKLLGTTISLLNNDYEFKITGSVVIFEGFLKAVSLDDNEDL
ARLPKLKIGQFINLNELYGIRHFTKPPSRYSEARLIKTLEEIGVGRPSTYAPIMKTLRDR
GYIMIENKAIKATERGILTSDKLQEYFNDIINESYTSSIEETLDVISKGESEPKPLLKEF
WERFEPRIENAMNLMEEIPVEKARIICPECGNDLVYRYGKYGKFIACSGFPKCRYIHQTG
PKFGTCPKCGVGEIILKFNKRNQRFKACTNYPNCDHTDSYKEEKSDGNGGDNIEEKNELY
RINFLN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaccttagttattctggagtcacctacgaaaacaaaagccgttgcaaaatat
ttaggggaaggttatactgttttatcttcagaaggtcatattcgaaatttgtcaaccaaa
ggagaatttgggctcggagttgatattataacttttgaaccaacttataaaattgaacgt
gggaaaaaagaaaaagttaaagaattaaaaacagcagctaaatcagcggaattagttatt
cttgcgaccgacccggaccgcgaaggagaggcaattgcttaccacttaaatgaagtttta
gcatgtaaagataaatcgcgtcgagtacggtttaatgaaattacaaaagatgctgtttta
gaagctttccaatatcaaactgatattgatatgaacttagttaagtcccaagaagcacgg
cgtattttagaccgttttattgggtttcggttaagtaagctattacagaaaaaaattaaa
tcaaaatcagccgggcgggtacaatcagtagccttgaaattaattgtggaacgggaaaaa
gaatatcaaaattttattcccaaagaatattgaacagttgaggggttatataaaaaagcc
gttattaaattagttaagtatcaaaataaaaaaattgaacttaacaatgaagcaaaagtt
ttaaaagtaaaagctgctctccaaaaagactatgaagttgtggatattaataaaagtgaa
cgtcaacgaaaatctcctaatccccacaccacatcaacaatgcttcaagaagcaagtagt
aagttgggattcccgtcaaacaaaacttcaatgattgcgcaacaattatatgaagggatt
aaagttaaagataatttagtcggatttattacttatccgcggacagattcaattcggtta
agcgaaaaatttgttcaagatgcttttaactacattactattaactatgggcaagaatat
ctgggggaagttaaacaaccatcacagaaaaagaaaaatgtccaagatgcccatgaagca
atccgccccacggatttaacaatgacaccagacttagcaaaagagtacctttcacgtgac
caatgacggttatataaaatagtttatcaacgagcactagctagtttaatggcaagcgca
aaattattaggaacaacaattagtttactaaataatgattatgaatttaaaattaccggt
agtgttgtgatttttgaaggatttttaaaagcagtttctttagatgataatgaagatctc
gctagattaccaaaattaaaaattggccagttcattaatttaaatgaattatacggaatt
cgtcattttacaaaaccaccaagccgttattcagaagcccgattaattaaaactttagaa
gaaatcggggttggtcgcccttcgacatatgctcctattatgaaaacgttgcgtgatcgt
ggttatattatgattgaaaataaagcaattaaagccactgaacggggaatcttaacaagt
gataaattacaagaatattttaatgatattattaatgaatcctatacttcttcaattgaa
gaaacattagatgttatttcgaaaggggaaagtgaacccaagccgttattaaaagaattt
tgagaacgctttgaaccacgaattgaaaatgcgatgaatttaatggaagaaattccggtt
gaaaaagcgagaattatttgtccagaatgtggaaatgacttagtttatcgctatgggaaa
tatggaaaattcattgcttgttcagggtttccaaaatgtcgctatattcaccagacggga
ccaaagtttgggacttgtccaaagtgtggggttggcgaaattattttaaaatttaacaaa
cgcaatcaacgttttaaagcatgtactaattatccgaactgtgatcacacggattcttat
aaagaagagaagtcagatggcaatggtggagacaatattgaagaaaaaaatgagttatat
cgcattaattttctaaattag
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