KEGG   Spiroplasma mirum ATCC 29335: SMM_0410
Entry
SMM_0410          CDS       T03003                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
smir  Spiroplasma mirum ATCC 29335
Pathway
smir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMM_0410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smir03019]
    SMM_0410
   03009 Ribosome biogenesis [BR:smir03009]
    SMM_0410
Enzymes [BR:smir01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SMM_0410
Messenger RNA biogenesis [BR:smir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SMM_0410
Ribosome biogenesis [BR:smir03009]
 Prokaryotic type
  rRNA helicases
   SMM_0410
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 P-loop_SecA Cas3-like_C_2 Phage_integrase
Other DBs
NCBI-ProteinID: AHF60853
UniProt: W0GP55
LinkDB
Position
385788..387071
AA seq 427 aa
MNFNKLNLKQELHRAILKTGYVKATEIQQKAIPVAIDNYDIIGKSHTGTGKTAAFVLPIL
HNLDVNLKKPQAIILCPTRELATQVLDQVRKYALFLHGVNATLLCGGSQIKSQIYALKKA
NVVVGTPGRIADHLHRHTLRLNNIKTIVLDEADEMLKMGFKKDIDLVFNNAPQNYQTLLF
SATMSKPVLEITNTYQKNPVSITIQKNADEQNNIDQYYINTYGLNKEEVLIKLYQDLKPK
LSIIFSNTKMYTEKIAKLLTNNGIKSRVINGDKKQVDRYRSMQAFRNHEVRVLIATDVAA
RGIDVDGIDYVFNYDLPVELESYTHRIGRTARAGAKGTAITFINSRNSLNELRKIEQYQK
KQINPYDISSYNFTKDYAKAPTNAPLKFKKTFGSKNNRSWNKPAKYKKEWTNHHQEYQFN
RSFKKTK
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgaattttaataaattaaatttaaaacaagaattgcatcgcgcaattttaaaaacgggt
tatgtgaaagctacggaaattcaacaaaaagcaattccagttgccattgataattatgac
attattggaaaatcacataccggaactggcaaaacagcagcgtttgttttaccaatctta
cataatttagatgttaacttaaaaaaaccacaagcaataatattatgtccaacccgcgaa
ttagcaacccaagtgctagatcaggttcgtaaatacgcgttatttttacacggcgtaaat
gctacattattatgtggaggatcacaaataaaaagtcaaatttatgctttaaaaaaagca
aatgtggtggttggaacaccagggcggattgcagatcatcttcatcgtcacactttacgc
ttaaataatatcaaaacaattgttctagatgaagccgatgaaatgctaaaaatgggcttt
aaaaaagatattgatttagtttttaataatgcccctcaaaattaccaaaccttattattt
tcagcaacaatgtcaaaaccagtgctggaaattactaatacttatcaaaaaaatccggtt
agtattactatccagaaaaatgctgatgaacaaaataacattgatcagtactatattaac
acttatgggttaaacaaagaagaagtgttaattaagttatatcaagatttaaaaccaaaa
ttaagtattatcttttccaatactaaaatgtatactgaaaaaattgcaaaattattaact
aataatgggattaaatcacgggttattaatggtgataaaaaacaagttgatcgttaccgt
tcaatgcaagcttttcggaaccatgaagttagggtgttaattgcgacagatgttgccgcc
cgggggattgatgttgatggtattgattatgtttttaactatgatttacccgttgaacta
gaaagttatacccaccggattgggcgaactgctagagcgggagccaaaggaacagcaatt
acttttattaattcgcgtaatagtcttaatgaattacgcaaaattgaacaatatcaaaag
aaacaaattaacccatatgatattagtagttataatttcacaaaagattatgcaaaagca
cctactaacgctcctctaaaatttaaaaaaacgtttggtagtaaaaataaccgttcatga
aataaaccagcaaaatataaaaaagaatgaactaaccaccatcaagaatatcaatttaat
cgtagttttaaaaaaactaaataa

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