Entry |
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Name |
(GenBank) putative ATP-dependent RNA helicase
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KO |
|
Organism |
smir Spiroplasma mirum ATCC 29335
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:smir00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMM_0410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:smir03019]
SMM_0410
03009 Ribosome biogenesis [BR:smir03009]
SMM_0410
Enzymes [BR:smir01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMM_0410
Messenger RNA biogenesis [BR:smir03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMM_0410
Ribosome biogenesis [BR:smir03009]
Prokaryotic type
rRNA helicases
SMM_0410
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
385788..387071
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AA seq |
427 aa
MNFNKLNLKQELHRAILKTGYVKATEIQQKAIPVAIDNYDIIGKSHTGTGKTAAFVLPIL
HNLDVNLKKPQAIILCPTRELATQVLDQVRKYALFLHGVNATLLCGGSQIKSQIYALKKA
NVVVGTPGRIADHLHRHTLRLNNIKTIVLDEADEMLKMGFKKDIDLVFNNAPQNYQTLLF
SATMSKPVLEITNTYQKNPVSITIQKNADEQNNIDQYYINTYGLNKEEVLIKLYQDLKPK
LSIIFSNTKMYTEKIAKLLTNNGIKSRVINGDKKQVDRYRSMQAFRNHEVRVLIATDVAA
RGIDVDGIDYVFNYDLPVELESYTHRIGRTARAGAKGTAITFINSRNSLNELRKIEQYQK
KQINPYDISSYNFTKDYAKAPTNAPLKFKKTFGSKNNRSWNKPAKYKKEWTNHHQEYQFN
RSFKKTK |
NT seq |
1284 nt +upstreamnt +downstreamnt
atgaattttaataaattaaatttaaaacaagaattgcatcgcgcaattttaaaaacgggt
tatgtgaaagctacggaaattcaacaaaaagcaattccagttgccattgataattatgac
attattggaaaatcacataccggaactggcaaaacagcagcgtttgttttaccaatctta
cataatttagatgttaacttaaaaaaaccacaagcaataatattatgtccaacccgcgaa
ttagcaacccaagtgctagatcaggttcgtaaatacgcgttatttttacacggcgtaaat
gctacattattatgtggaggatcacaaataaaaagtcaaatttatgctttaaaaaaagca
aatgtggtggttggaacaccagggcggattgcagatcatcttcatcgtcacactttacgc
ttaaataatatcaaaacaattgttctagatgaagccgatgaaatgctaaaaatgggcttt
aaaaaagatattgatttagtttttaataatgcccctcaaaattaccaaaccttattattt
tcagcaacaatgtcaaaaccagtgctggaaattactaatacttatcaaaaaaatccggtt
agtattactatccagaaaaatgctgatgaacaaaataacattgatcagtactatattaac
acttatgggttaaacaaagaagaagtgttaattaagttatatcaagatttaaaaccaaaa
ttaagtattatcttttccaatactaaaatgtatactgaaaaaattgcaaaattattaact
aataatgggattaaatcacgggttattaatggtgataaaaaacaagttgatcgttaccgt
tcaatgcaagcttttcggaaccatgaagttagggtgttaattgcgacagatgttgccgcc
cgggggattgatgttgatggtattgattatgtttttaactatgatttacccgttgaacta
gaaagttatacccaccggattgggcgaactgctagagcgggagccaaaggaacagcaatt
acttttattaattcgcgtaatagtcttaatgaattacgcaaaattgaacaatatcaaaag
aaacaaattaacccatatgatattagtagttataatttcacaaaagattatgcaaaagca
cctactaacgctcctctaaaatttaaaaaaacgtttggtagtaaaaataaccgttcatga
aataaaccagcaaaatataaaaaagaatgaactaaccaccatcaagaatatcaatttaat
cgtagttttaaaaaaactaaataa |