Spiroplasma mirum ATCC 29335: SMM_0656
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Entry
SMM_0656 CDS
T03003
Symbol
trmU
Name
(GenBank) putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
smir
Spiroplasma mirum ATCC 29335
Pathway
smir04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
SMM_0656 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smir03016
]
SMM_0656 (trmU)
Enzymes [BR:
smir01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
SMM_0656 (trmU)
Transfer RNA biogenesis [BR:
smir03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
SMM_0656 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_C
tRNA_Me_trans_M
NAD_synthase
ThiI
QueC
ATP_bind_3
Asn_synthase
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
AHF61078
UniProt:
W0GPQ5
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All DBs
Position
complement(624458..625591)
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AA seq
377 aa
AA seq
DB search
MEKVVVGLSGGVDSSVSLYLLKKAGYQVSALFMRNWDSNLNNDILGHKVLTSTICPQEID
YNDAQMVANQLGVEINRVDFIQEYWDYVFTYFLREYQNGRTPNPDILCNKYIKFNYFLKY
ALDNIKADKIAMGHYARVRFNPVLQEYQLLRGLDVNKDQTYFLCQLNQQQLSKTLFPIGE
LTKDEVRKIADEQYLATAHKKDSTGICFIGERNFKQFLENYIQNQHGDIVDIETNDVVGR
HTGVMYYTIGQRKGLNLGGMDERYFTVGKNIKDNILYVSKGSEDKWLFSTSCLVSDLNWI
NRLPAQKFNCTAKFRYRQKDIPVQVEILPNNQAVISFATKVKAITPGQEAVFYDGEVCLG
GGIINEAYLNGQKLWYL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagttgttgttggtttatcggggggcgttgactcttcggtaagcttatattta
ttgaaaaaagctggatatcaagttagtgctttatttatgcgcaattgggatagtaattta
aataatgatattttaggacataaagtcctcactagcactatttgtccccaagaaattgat
tataatgatgctcaaatggttgccaatcaattaggggttgaaattaaccgggttgatttt
atccaggagtattgagattatgtctttacttattttttacgtgaatatcaaaatgggcgg
acaccaaatcccgatattttatgtaataaatatattaaatttaattattttttaaagtat
gccttagataatattaaagccgataaaattgcgatgggtcactatgcgcgggttcgtttt
aacccagtattacaagaatatcaattattacgaggacttgatgttaacaaagaccaaact
tattttttatgtcaactaaatcaacaacagttatcaaaaacattatttccgattggtgaa
ttaactaaagatgaagtgcgaaaaattgctgatgaacaatacttagcaactgcccacaaa
aaagattcaacggggatctgttttattggcgaacgaaattttaaacaattcttagaaaac
tatattcaaaaccaacatggtgatattgttgatattgaaactaatgatgttgttggtcgt
catacgggagtaatgtattataccattggtcaacgcaaaggtttaaaccttgggggaatg
gatgaacgttattttacggttgggaaaaacatcaaagataatattttatatgttagcaag
gggagcgaggataaatgattattttcaaccagttgcttagttagcgatcttaactgaatt
aatcgtttaccagctcaaaaatttaattgtacggcaaaattccgttatcgccaaaaagac
attccggtgcaagtcgaaatcttaccaaataaccaagcggtgattagttttgccacaaaa
gttaaggcaattactccaggccaagaagcagttttttatgacggggaagtttgtttagga
ggaggaattattaacgaagcttatttaaatggtcaaaaactatggtatttataa
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