Spiroplasma mirum ATCC 29335: SMM_0786
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Entry
SMM_0786 CDS
T03003
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
smir
Spiroplasma mirum ATCC 29335
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smir03019
]
SMM_0786
03009 Ribosome biogenesis [BR:
smir03009
]
SMM_0786
Enzymes [BR:
smir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMM_0786
Messenger RNA biogenesis [BR:
smir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMM_0786
Ribosome biogenesis [BR:
smir03009
]
Prokaryotic type
rRNA helicases
SMM_0786
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AHF61189
UniProt:
W0GRD0
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All DBs
Position
complement(747141..748511)
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AA seq
456 aa
AA seq
DB search
MNNFIDFGLKKFLMTGITDLGFDSPTPVQQQVIPYLLKYQNVICKSHTGTGKTHTFILPI
LNNLDYNSSALQSVIVAPTRELAKQIYENIRFFKTYNPALRTGYYIGGEDINRQIDQLTK
HQPQIIVATPTRLKDLFNHQALNFGKLKTFIIDECDMIFDLGFIEDVDFVLSKVSPDVKI
SVFSATIAPGLRPFLLKYLTNPHLIEINDNLATNQNIEHILIPTKHQERSSVLLKLLATL
NPYLCIIFVNKKEMIEQYYDLLLKNNYQVTQLHAGLAPRTRMQTIKRIKNLEFKYIIASD
IAARGIDLDGVSHVISIDLPTDLEYYIHRSGRTGRANYHGYSYVLYDTKNLNLVKQLKSK
GIEFQVMKWRGNDLVVANLTPMAKKSTSEPNHEINKIINKYPTKNNQKKVKPGYKKKRKA
EIAELKRKTRGEHIKASIKKIKKQKAKQRSLKLYDK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttattgattttggtttaaaaaaatttctgatgaccggaattacagattta
gggtttgatagtcccactcctgtgcaacaacaagtaattccgtatttattaaaataccaa
aatgttatttgtaaatcacacaccggaacggggaaaacacatacctttattttaccaatt
ttaaataatttagattataatagttctgctcttcaaagcgtgattgttgcgccgacgcga
gagttagcaaaacaaatttatgaaaacattcgtttttttaaaacatataatcctgcgtta
agaactggttattatattgggggcgaggatattaaccgtcaaattgatcagctgactaag
caccaaccccaaattatcgtggcaacaccgacaaggttaaaagatttgtttaatcaccaa
gctcttaattttgggaagttaaaaacttttattattgatgaatgtgacatgatttttgat
ttaggatttattgaagatgttgattttgtcttaagtaaagttagtccggatgtgaaaatt
tcagttttttccgccacaattgctcctggtcttcgtccttttttactaaaatatttaact
aatcctcatttaattgaaattaacgataacttggcaactaaccagaacattgaacatatt
ttaattcccactaaacaccaagaacgatcaagtgttttattaaaattattagctacgctt
aacccgtacttatgtattatctttgttaataaaaaagaaatgattgaacaatactatgat
ttattattaaaaaataattaccaagtaacgcagctccatgctggcttagcgccccgtact
cgcatgcaaacaattaagcgtattaagaatttggaatttaaatatattattgccagtgat
attgctgcccgtggaattgatcttgatggggttagtcatgtgatttcaattgatttacca
acagatttagaatattatattcaccgcagtgggcgaactggtcgagctaattaccatggg
tatagttatgttttatatgatactaaaaatttaaacttagttaaacaattaaaaagtaag
ggaattgaattccaagtgatgaaatgacgggggaatgacttggtggttgctaatttaact
ccgatggcaaaaaaatcgacatcagagccaaaccatgaaattaataaaattattaacaaa
tatccaacaaaaaataatcagaaaaaagtgaaacctgggtataagaaaaaacggaaagca
gaaattgctgaattaaaacgaaaaacgcgcggtgaacatattaaagcctcaattaaaaaa
ataaaaaaacaaaaagctaagcaaagaagtttgaaattgtatgataaatag
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