Spiroplasma mirum ATCC 29335: SMM_0831
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Entry
SMM_0831 CDS
T03003
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
smir
Spiroplasma mirum ATCC 29335
Pathway
smir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMM_0831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smir03019
]
SMM_0831
Messenger RNA biogenesis [BR:
smir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMM_0831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
dUTPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AHF61230
UniProt:
W0GLV8
LinkDB
All DBs
Position
complement(791425..792954)
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AA seq
509 aa
AA seq
DB search
MPVYGWVILLGACALIFYLIGYLVEKYLHFKLIKNTEKKIKEAELTAKKIINAAKADAKV
EAAQIRQDVREEVAQKRAEILENENFFKEREKNIIIREEVLTQKEQELFYKREELQKLLA
KYDGLINNTIQQLEQIAGFSQDQAKDILFKEINVKYQKQIGEFLKNAEVNVRLKAKETAV
NIITQAIERYSADVVVEKTTVVINLADDNMKGRIIGKNGRNIKTFETTAGVDLIIDDTPN
IIQVSSFNPIRREIAKKALERLITDGRIQPNKIEEAIRLEKTDLDTTILQTGKDTILELG
IYNIDLELIRYIGMLKYRTSYGQNVLMHSIEVAKLAGIMASELGLDPEIAIRAGLLHDIG
KAVDFENEGSHVTLGVQLATKYKESRIVINAIHSHHGEVPMDNPYSPLVAAADTLSAARP
GGRNNNVENYISRMKELEQMCMEVRGVAKAYALQAGRQIRVIVNPERTTDIQAQKIAFDI
REKISHNKIVPGDIVITVIRELRFIETVI
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgccagtttatggatgagtaatattattaggcgcttgtgccttaatattttatttaatt
ggatatttagttgaaaagtatctacattttaaattaattaaaaatactgagaaaaaaatt
aaagaagcagaactaactgcaaaaaaaattattaatgcggcgaaagcagatgcaaaagtt
gaagctgctcaaattagacaagatgttcgcgaagaagtcgcacaaaaacgagcagaaatt
ttagaaaatgaaaatttttttaaagaacgtgaaaaaaatattattataagagaagaagta
ttgacgcaaaaagaacaggagttattttataaaagagaggaattacaaaagttattagct
aaatatgacggtttaatcaataatacaatccagcaattagaacaaattgcagggttttcg
caagatcaagcgaaagatattttatttaaagaaattaatgttaaatatcaaaaacaaatt
ggggaatttttaaaaaatgccgaagtaaacgtccggttaaaagcaaaagaaacggctgtt
aatattattactcaggctattgaacgatattcagcggatgtggttgttgaaaaaacaacc
gtggttattaatttagctgatgataatatgaagggaagaattattggaaaaaatggaaga
aatattaaaacttttgaaacaaccgcgggtgttgatttaattattgatgatactcctaat
attattcaggtttcttctttcaatcccattcggcgtgaaattgctaaaaaagctttggaa
cgattaattacggatggtcgaattcaaccgaataaaattgaagaagcaattcgcttagaa
aaaactgatcttgatacaacaattttacaaactggaaaagataccattttagaactagga
atttataatattgatttagaactaattcgttatattggaatgctaaaataccgcactagt
tatggccaaaatgttttaatgcattcgattgaagttgctaagttagccggtattatggca
agtgaattaggacttgatccggaaattgcgattcgggcaggattattacatgatattggg
aaagcagttgattttgaaaatgaaggtagccatgtaaccttaggggtccagttagcaact
aaatataaagaaagtcgaattgttattaatgctattcattcgcaccatggggaagttcca
atggataatccgtactcaccattagtagccgctgctgatactttatcagctgctcgccct
ggtggtcgcaataataatgttgaaaattatattagtcggatgaaagagttggagcaaatg
tgtatggaagtccggggggtggccaaagcttatgccttacaagcaggtcgccaaattcgg
gtaattgttaatcccgaacggacaactgatattcaggcccaaaaaatagcctttgatatt
cgcgaaaaaattagtcataataaaatcgttcccggtgatattgttattacggtaattcgg
gaattacgctttattgaaaccgtaatttag
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