Salegentibacter mishustinae: LDL76_01495
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Entry
LDL76_01495 CDS
T07820
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDL76_01495 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smis03021
]
LDL76_01495 (rpoC)
03400 DNA repair and recombination proteins [BR:
smis03400
]
LDL76_01495 (rpoC)
Enzymes [BR:
smis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDL76_01495 (rpoC)
Transcription machinery [BR:
smis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDL76_01495 (rpoC)
DNA repair and recombination proteins [BR:
smis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDL76_01495 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UBZ07398
LinkDB
All DBs
Position
complement(332645..336946)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNTVKRFDKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKQVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQAGIAKNEEGEPLKKMDFLTEEEYLNVLDSLPQENMY
LEDSDPNKFIAKMGAECLIEILRRIDLNELSYELRHKANNETSKQRKTEALKRLQVVEAF
RDANNNRENLPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKMHECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMILGLYYMTKSRKSTDEV
KVKGEGLTFYSDEEVVIAYNQKRVDLNAEIKIRAKDFNEVGELTYQIIETTVGRVLFNQA
VPEKVGYVNTVLTKKNLRDIIGDVLAKTSVPETGEFLDAIKEMGYGYAFRGGLSFSLGDI
IIPEEKQSMIDEANEQVEGIVGNYNMGLITNNERYNQVIDIWTSTNAGLTELAMKRIRED
KQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEEDCGTLRGVEVRPLKKNE
EIVESLGERILGRISLHDVLNPSNNELLVASGEEITSEIVTKIENAPIESVEVRSPLTCE
AKKGICVKCYGRNLSTNKLVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LEAKFDGIAEIEDLKVVKGEAPDGSQAEIVISRTAELKIKDKKTGVVLSNNNIPYGSQIF
IDNGTEVSKGDLVCQWDPYNGVIISEFAGKIKYENVEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLHILGKKDEVIRSYNLPVGAHLMVDNEEKIGVGKILVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSVTPEDILNIKGPNAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKSDFIEENDKVFGMKVVEDAGDSENLRPGQIVSPREL
RDENSLLRREDKNLATARDVTAATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKIDKLEGLKENVIVGHRIPAGTGMRKYDSIIVGSKEEFDEMMEHKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaataatgataagaatacagtaaagagatttgataaaatctctatcggtttg
gcttccccggaatctatcctcgcagaatctcgtggtgaagttctaaaaccggaaactatc
aattatcgtacgcacaaacccgaacgtgacggtttgttttgtgagcgtatttttggtcct
gtaaaggattacgaatgtgcctgcggtaaatataaaagaatacgttacaaaggaattgtt
tgtgaccgttgtggggtagaagtaaccgaaaaacaagtacgtagagaccgtgttgggcac
attaatttggtagttcctgtagcacatatctggtatttccgttctttacctaataaaatt
ggatacttgcttggtcttccatctaagaaattagatatgatcatttactacgagcgttac
gtagtaattcaagccggtattgctaaaaatgaagaaggtgaaccattaaagaaaatggat
ttccttactgaagaagagtatctaaacgttttagatagccttccgcaggaaaatatgtat
ttagaagacagcgacccaaataagtttatcgctaaaatgggagcagaatgtcttattgaa
atactaagaagaatagatcttaacgaactttcttacgagttaagacataaggcaaataac
gaaacttctaaacagcgtaaaactgaagcgcttaagcgtcttcaggttgtagaagctttc
cgtgatgccaataacaatcgcgaaaatcttccggaatggatgattatgaaagtggttcct
gtaattccaccagaattacgacctcttgtacctcttgatggtggacgtttcgcgacttca
gatttaaatgatctttacagaagggtgattattcgtaacaaccgtctaaaaagattaatg
gagatcaaagctcctgaagttattttacgtaatgaaaaacgtatgcttcaggaatcagta
gattcattgtttgacaacacaagaaaatcttcagcggtaaaaacagactctaaccgtccg
ttaaaatcgctttcagattctcttaaaggtaagcagggacgttttcgtcaaaacttactt
ggtaaacgtgtagattattcagcacgttcggtaattgtcgttgggccagaattgaaaatg
cacgaatgtggtcttccaaagaatatggcagctgaactttacaagccttttgtaattaga
aaactaattgaaagaggaattgtaaaaacagtaaaatctgccaagaaaattatagataag
aaagagccggtagtttgggatatccttgagaacgttcttaaaggacacccggtattactt
aaccgtgctcctacgcttcaccgtttaggtatccaggcattccagccaaaacttattgaa
ggtaaagcgatacaattacacccattagcctgtacggcatttaacgccgattttgatggt
gaccagatggcggttcacttaccgctagggccagaagctattttagaagctcagctatta
atgcttgcttctcataatattcttaaccctgcaaacggttcgccaattacagtaccgtct
caggatatgattcttggtctttattatatgaccaagtctagaaaatctacagacgaggtt
aaggttaagggtgaaggacttactttctattctgatgaagaagtggtaatcgcttacaac
cagaagagagtagaccttaatgccgaaatcaagattcgcgctaaagattttaatgaagta
ggtgagttaacttaccaaattatagaaactacggttggtagagtattgtttaatcaagct
gtaccagaaaaagtaggttatgtgaatacagtattaaccaagaaaaaccttagggatatt
attggtgatgtattggcaaaaaccagtgttcctgaaaccggagaattccttgatgctatt
aaggaaatgggttatggatacgctttccgtggtggactttccttcagtttaggtgatatt
attatccctgaagagaaacaatctatgattgatgaggctaatgaacaggttgaaggtatt
gtaggaaactataatatggggcttattaccaacaacgaacgttataaccaggtaattgat
atctggacctctaccaatgccggtctaaccgaattggctatgaaacgtattcgtgaagat
aagcaaggattcaactctgtgtttatgatgcttgactctggtgctcgtggatctaaagaa
cagattcgtcagttaaccggtatgcgtggtcttatggccaagcctaagaaatctaactct
ggtggaggggaaattattgaaaacccaattctttctaactttaaagaaggtctttcaatt
cttgaatactttatctctactcacggtgcacgtaaaggacttgccgataccgcacttaaa
acagccgatgctggttacttaacccgtagattggtagatgtttcgcaagatgttattgta
aatgaagaagactgcggaactttaagaggagtagaagttagaccacttaaaaagaacgaa
gaaattgtagaatctcttggagagcgtattttaggacgtatttctctgcacgatgttctt
aatccttctaataatgaacttttagtagcttcaggcgaagaaattacttcagaaattgta
acgaaaattgaaaacgctccaattgaaagcgtagaagtaagatctccactaacctgtgaa
gctaaaaaaggaatttgtgtaaaatgttacggaagaaacctttctaccaataaactggta
caaagaggtgaagctgtaggtgttgttgctgcgcaatctattggagagcctggtacacag
ttaacactacgtacgttccacgtgggaggtattgcaggtaacatttcagaagataataaa
cttgaggctaaatttgacggtattgccgaaattgaagaccttaaagtagtaaaaggagaa
gctcctgatggtagccaggctgaaattgtaatttcacgaactgccgagcttaaaataaaa
gataagaaaaccggggtggtattgagtaacaataacattccttatggttctcaaatcttt
atcgataacggaactgaagtttccaaaggtgatcttgtttgccaatgggatccatataac
ggagtaattatttcagaatttgccggtaagattaaatatgaaaacgttgagcagggtgtt
acttaccaggtagagatagatgagcaaacaggattccaagaaaaagttatttctgaatct
cgtaacaaaaagcttattccaaccctacatattttaggtaagaaagacgaagtaattcgt
tcttataaccttccggtaggggctcaccttatggtagacaacgaagagaaaattggagtt
ggtaagattttggttaagattcctcgtaaatcatctaaagcaggtgatattaccggtggt
cttccaagggtaaccgagctttttgaagcacgtaacccatctaacccagctgttgtgagt
gagatcgatggtgttgtttccttcggaaaaatcaaaagaggtaaccgcgagattatcgtt
gaatctaaattaggagaggttaagaaatacttagtgaagttatctaaccagatccttgtt
caggaaaacgattatgttcgtgcaggtatgccactttctgatggttctgtaactccagaa
gatattcttaatatcaaagggccaaacgcggtacaacagtatcttgtaaacgaagttcag
gaagtttaccgactacagggtgtgaagattaatgataagcactttgaggttgttgtaaga
caaatgatgcgtaaggttagaattcaggatccgggagatactattttcttagaaaaccaa
cttgttcataaatcagatttcattgaagagaacgataaagtcttcggaatgaaagtggtt
gaagacgctggagattcagagaatttaagaccaggacaaattgtttcaccaagagagctt
agagatgagaattcattgttgagacgtgaagataaaaaccttgcaactgcaagagacgta
actgctgcaaccgctacaccggttcttcagggtattactcgtgcatcgctacaaacaaaa
tcgtttatatctgcggcttccttccaggaaactaccaaagtattgaacgaggctgccgta
agcggtaagatcgataagcttgaaggattgaaggaaaatgtaattgtaggacatagaatt
cctgcaggtacaggtatgcgcaagtacgatagcattatcgttggttctaaagaagaattt
gacgaaatgatggaacacaagcaagaagttaattataactaa
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