Salegentibacter mishustinae: LDL76_08210
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Entry
LDL76_08210 CDS
T07820
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LDL76_08210 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smis03400
]
LDL76_08210 (ligD)
Enzymes [BR:
smis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LDL76_08210 (ligD)
DNA repair and recombination proteins [BR:
smis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LDL76_08210 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UBZ08680
LinkDB
All DBs
Position
1767455..1769911
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AA seq
818 aa
AA seq
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MSLADYKKKRNFKNTPEPGADFSTENRGQFVIQRHEATRLHYDLRLEMEGVLKSWAVPKG
PSMNPKDKRLAIETEDHPVKYLDFEGTIPKGNYGAGEMQIWDKGTFKAAAKTSDNLEEQW
EDGNLKIVFTGTKIKGEFALVKTKRGDKKNQWLLIKKNDDFSTDLDYDAEVFTEKKSQNK
GHKKQEGKVRKIKPSEFIKPMLATTGKKIFNDPDWIYELKWDGYRALAHVEDGKVDLYSR
NGISFNSKFPKLVEDLEQVENNVILDGEIVVLNKDGISQFQALQNYDENTPGSLRFYVFD
MLFLNGHSMLDLPLLERKSLIPEVIEDLDMVQYCDHIEGMGTAFYKKAIDSGMEGVIAKK
ADATYSPGYRTEKWLKIKADNSREVLICGYTTSEGAVFGSLIMGAYEDEELKYIGNCGTG
FSNDEQKALLKKFKSRKRKTSPFSEKINLKGREPVWMRPDLVAEVKYSEITKTGKLRHPV
FKALRKDKDPEEISVEEIVENKTSEEKKTKKASSKKSAESLEIDGIEVPFTNLDKMYWPD
SGFRKYDLIDYYIQVSEVMLPYLKDRPQNLHRHPNGIKKQGFYQKDNEGNLPDWVATTEI
YSESSEKDIEYLLCQNEATLLYMANLGCIEINPWNSRIDNLDNPDYTVIDLDPSDKNTFD
EVIEVAQAAKEVMDIAKIDGFCKTSGSSGLHIYIPLGGNYSYDEARDFTKLLCYYIADKV
PKITSMDRAKKKRKDKIYLDYLQNRRGQTLASAYCVRPKPGAPVSAPLEWKEVKSGLKIL
DFNIKNMSQRIQEKGDLFKKVLGKGIDMEQAMQSLESS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagccgattataaaaaaaagcgaaattttaaaaacacgccagagcccggcgcc
gatttttctactgaaaatcgcggacagtttgtaattcagcggcatgaagccacacgtctg
cattacgacctacgtctggaaatggagggcgttcttaaaagttgggccgtgcctaaaggc
ccttcaatgaatccgaaagataaacgcctggcgattgaaaccgaagatcatcccgttaaa
tatttagattttgaaggtactatcccaaaaggaaattatggagcgggggaaatgcagatt
tgggataaaggcacttttaaagctgctgcaaaaactagcgataacctggaagaacaatgg
gaagatggtaacctgaaaatcgtttttaccggtaccaaaattaaaggtgaattcgctttg
gtaaaaactaagcgaggagataaaaagaaccagtggctacttattaaaaaaaacgatgat
ttctctaccgatctggattatgatgcggaagtttttaccgaaaaaaagagccaaaataaa
ggccataaaaagcaagaaggaaaagttagaaaaataaaaccttcagaatttataaagcca
atgcttgctaccaccggcaagaaaatttttaacgatcctgattggatttacgagttaaaa
tgggatggttatcgcgccctggcgcatgttgaagacggcaaggttgacctctattctcgt
aatggaatttcctttaattctaaatttccaaaactggtagaggatttagagcaggtagaa
aataatgtgatcttagacggtgaaattgtggttttaaataaagatggaatttcacagttt
caggctttacaaaattacgatgaaaatactcccggaagcttgcgtttctatgtttttgat
atgctctttctcaatgggcattctatgttagatctgccgcttttagaacgaaagagctta
attcctgaagttattgaagacctggacatggttcaatattgtgaccatattgaaggcatg
ggaacggccttttataaaaaagccatagattcagggatggaaggggtgatcgctaagaaa
gccgatgctacctattctccaggctatagaactgaaaaatggttgaaaataaaggccgat
aattcacgagaagtgcttatttgcggctacaccacatcagaaggcgctgtttttggttct
ttaattatgggtgcttatgaagatgaagagctaaaatatatagggaactgcgggaccggt
ttttcgaatgatgaacagaaagcattgttgaaaaagtttaaaagcaggaaacgtaaaacc
tctcctttttcagaaaaaataaatttaaaagggagagagccggtttggatgcgccccgat
ttggttgctgaggtaaagtattcggaaattacaaaaacaggaaaactacggcatcccgtt
tttaaagctcttagaaaagataaagatcccgaagaaatttcagttgaagaaattgttgaa
aataaaacttccgaagaaaagaaaactaaaaaagcttcttcaaagaaatctgccgaaagc
ctggaaatagatggtatagaagtgccgtttaccaatttggacaagatgtattggccagat
tccggatttaggaaatacgatttaatagattattacatccaggtttcggaagtgatgttg
ccttatttaaaagacagaccacaaaatttacaccggcatcccaatggaatcaaaaaacaa
ggcttttaccagaaagataacgaggggaatttacccgattgggtagcaactactgaaatt
tattcggaatcttcagaaaaagacatcgagtatttgctttgccagaatgaggctacgctg
ttatatatggctaatttaggttgtatagagatcaatccatggaattcgagaattgataac
ctggataatccagattatacggtgatagatttagatccttcagataaaaatacttttgat
gaagtgattgaagttgcccaggccgcgaaagaagtcatggatatagccaaaattgatggt
ttttgtaaaacttccggttctagcggacttcatatttatattccgctaggcggaaattat
agttatgatgaagcgcgcgatttcaccaaattactgtgttattatattgcagataaagtc
ccgaaaataactagtatggatcgcgctaaaaagaagcgaaaagacaagatctaccttgat
tatttacaaaatcgaagaggtcaaaccctggcttcagcctattgtgttcgtccaaaaccc
ggtgcgccggtttccgctccactagaatggaaagaagtaaaaagcggactcaaaattctg
gatttcaacattaaaaatatgtcgcaacgaattcaggaaaaaggtgatctatttaaaaaa
gtactcggaaaaggtatcgatatggagcaggctatgcaaagcttagaatcttcctaa
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