KEGG   Salegentibacter mishustinae: LDL76_08210
Entry
LDL76_08210       CDS       T07820                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smis  Salegentibacter mishustinae
Pathway
smis03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LDL76_08210 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smis03400]
    LDL76_08210 (ligD)
Enzymes [BR:smis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LDL76_08210 (ligD)
DNA repair and recombination proteins [BR:smis03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LDL76_08210 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: UBZ08680
LinkDB
Position
1767455..1769911
AA seq 818 aa
MSLADYKKKRNFKNTPEPGADFSTENRGQFVIQRHEATRLHYDLRLEMEGVLKSWAVPKG
PSMNPKDKRLAIETEDHPVKYLDFEGTIPKGNYGAGEMQIWDKGTFKAAAKTSDNLEEQW
EDGNLKIVFTGTKIKGEFALVKTKRGDKKNQWLLIKKNDDFSTDLDYDAEVFTEKKSQNK
GHKKQEGKVRKIKPSEFIKPMLATTGKKIFNDPDWIYELKWDGYRALAHVEDGKVDLYSR
NGISFNSKFPKLVEDLEQVENNVILDGEIVVLNKDGISQFQALQNYDENTPGSLRFYVFD
MLFLNGHSMLDLPLLERKSLIPEVIEDLDMVQYCDHIEGMGTAFYKKAIDSGMEGVIAKK
ADATYSPGYRTEKWLKIKADNSREVLICGYTTSEGAVFGSLIMGAYEDEELKYIGNCGTG
FSNDEQKALLKKFKSRKRKTSPFSEKINLKGREPVWMRPDLVAEVKYSEITKTGKLRHPV
FKALRKDKDPEEISVEEIVENKTSEEKKTKKASSKKSAESLEIDGIEVPFTNLDKMYWPD
SGFRKYDLIDYYIQVSEVMLPYLKDRPQNLHRHPNGIKKQGFYQKDNEGNLPDWVATTEI
YSESSEKDIEYLLCQNEATLLYMANLGCIEINPWNSRIDNLDNPDYTVIDLDPSDKNTFD
EVIEVAQAAKEVMDIAKIDGFCKTSGSSGLHIYIPLGGNYSYDEARDFTKLLCYYIADKV
PKITSMDRAKKKRKDKIYLDYLQNRRGQTLASAYCVRPKPGAPVSAPLEWKEVKSGLKIL
DFNIKNMSQRIQEKGDLFKKVLGKGIDMEQAMQSLESS
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgagtttagccgattataaaaaaaagcgaaattttaaaaacacgccagagcccggcgcc
gatttttctactgaaaatcgcggacagtttgtaattcagcggcatgaagccacacgtctg
cattacgacctacgtctggaaatggagggcgttcttaaaagttgggccgtgcctaaaggc
ccttcaatgaatccgaaagataaacgcctggcgattgaaaccgaagatcatcccgttaaa
tatttagattttgaaggtactatcccaaaaggaaattatggagcgggggaaatgcagatt
tgggataaaggcacttttaaagctgctgcaaaaactagcgataacctggaagaacaatgg
gaagatggtaacctgaaaatcgtttttaccggtaccaaaattaaaggtgaattcgctttg
gtaaaaactaagcgaggagataaaaagaaccagtggctacttattaaaaaaaacgatgat
ttctctaccgatctggattatgatgcggaagtttttaccgaaaaaaagagccaaaataaa
ggccataaaaagcaagaaggaaaagttagaaaaataaaaccttcagaatttataaagcca
atgcttgctaccaccggcaagaaaatttttaacgatcctgattggatttacgagttaaaa
tgggatggttatcgcgccctggcgcatgttgaagacggcaaggttgacctctattctcgt
aatggaatttcctttaattctaaatttccaaaactggtagaggatttagagcaggtagaa
aataatgtgatcttagacggtgaaattgtggttttaaataaagatggaatttcacagttt
caggctttacaaaattacgatgaaaatactcccggaagcttgcgtttctatgtttttgat
atgctctttctcaatgggcattctatgttagatctgccgcttttagaacgaaagagctta
attcctgaagttattgaagacctggacatggttcaatattgtgaccatattgaaggcatg
ggaacggccttttataaaaaagccatagattcagggatggaaggggtgatcgctaagaaa
gccgatgctacctattctccaggctatagaactgaaaaatggttgaaaataaaggccgat
aattcacgagaagtgcttatttgcggctacaccacatcagaaggcgctgtttttggttct
ttaattatgggtgcttatgaagatgaagagctaaaatatatagggaactgcgggaccggt
ttttcgaatgatgaacagaaagcattgttgaaaaagtttaaaagcaggaaacgtaaaacc
tctcctttttcagaaaaaataaatttaaaagggagagagccggtttggatgcgccccgat
ttggttgctgaggtaaagtattcggaaattacaaaaacaggaaaactacggcatcccgtt
tttaaagctcttagaaaagataaagatcccgaagaaatttcagttgaagaaattgttgaa
aataaaacttccgaagaaaagaaaactaaaaaagcttcttcaaagaaatctgccgaaagc
ctggaaatagatggtatagaagtgccgtttaccaatttggacaagatgtattggccagat
tccggatttaggaaatacgatttaatagattattacatccaggtttcggaagtgatgttg
ccttatttaaaagacagaccacaaaatttacaccggcatcccaatggaatcaaaaaacaa
ggcttttaccagaaagataacgaggggaatttacccgattgggtagcaactactgaaatt
tattcggaatcttcagaaaaagacatcgagtatttgctttgccagaatgaggctacgctg
ttatatatggctaatttaggttgtatagagatcaatccatggaattcgagaattgataac
ctggataatccagattatacggtgatagatttagatccttcagataaaaatacttttgat
gaagtgattgaagttgcccaggccgcgaaagaagtcatggatatagccaaaattgatggt
ttttgtaaaacttccggttctagcggacttcatatttatattccgctaggcggaaattat
agttatgatgaagcgcgcgatttcaccaaattactgtgttattatattgcagataaagtc
ccgaaaataactagtatggatcgcgctaaaaagaagcgaaaagacaagatctaccttgat
tatttacaaaatcgaagaggtcaaaccctggcttcagcctattgtgttcgtccaaaaccc
ggtgcgccggtttccgctccactagaatggaaagaagtaaaaagcggactcaaaattctg
gatttcaacattaaaaatatgtcgcaacgaattcaggaaaaaggtgatctatttaaaaaa
gtactcggaaaaggtatcgatatggagcaggctatgcaaagcttagaatcttcctaa

DBGET integrated database retrieval system