Salegentibacter mishustinae: LDL76_11340
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Entry
LDL76_11340 CDS
T07820
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03030
DNA replication
smis03430
Mismatch repair
smis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL76_11340
03430 Mismatch repair
LDL76_11340
03440 Homologous recombination
LDL76_11340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smis03032
]
LDL76_11340
03400 DNA repair and recombination proteins [BR:
smis03400
]
LDL76_11340
Enzymes [BR:
smis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDL76_11340
DNA replication proteins [BR:
smis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LDL76_11340
DNA repair and recombination proteins [BR:
smis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LDL76_11340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
DEDDh_C
GIY_YIG_2
Rv2179c-like
DNA_pol_A_exo1
DUF7508
T5orf172
Motif
Other DBs
NCBI-ProteinID:
UBZ05959
LinkDB
All DBs
Position
complement(2449658..2451031)
Genome browser
AA seq
457 aa
AA seq
DB search
MYAVVDIETTGGKYNEEGITEIAIYKFDGLKVVDQFISLVNPEKAIQPFVVNLTGINNDM
LRNAPKFYEVAKRIVEITEDCVLVAHNSKFDYRILRTEFKRLGFDFERRSLCTVELSKKL
IPGQESYSLGKLVRALGIPLSDRHRASGDAQATVKLFKMLLAKDVEKNILKDAVKLEPKR
QVDTRLVYILEDLPGITGVYYFHNSDGDIIYIGKSKNIKKRVTQHFTSEQHKARQLQKEV
SSVSYEATGNELAALLKENQEIKHNKPKYNKALKKNIFSHALYHSTDENGYINLYIGRAG
KKNSITTFSSLKRARNVLETWIVKYDLCHKLCHLEKGAGNCFNYTIKKCNGACIRKEPVE
AYNERVRALIDQHSYKNQHMLVIDRGREVDEKSALLVEDGEFKGIGYFNLNHQINNIDII
RSIITPMKNDRDAQHIIQSYLRRNSRLKIVQLDPLAK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgcagtagtagacatagaaaccaccggtggtaaatataatgaagaaggaattacc
gaaatagctatctataaatttgatgggctaaaggtggttgaccagtttataagcctggtg
aaccccgaaaaagccatacagccttttgtagttaaccttaccggaataaataacgatatg
cttcgcaatgcgcccaaattttacgaagttgccaaacgcattgtagaaatcaccgaagat
tgtgttttagtagcgcacaattcaaaattcgattatcgtattcttcgaaccgaatttaag
agattgggctttgattttgaaagaagatcgctgtgtactgtagaactctctaaaaaactt
attcccggccaggaatcttatagtttaggcaaactggtgagagctttgggaattccttta
agtgatcggcatagagctagcggagatgcacaggcaaccgttaaactctttaaaatgtta
ctcgccaaagatgttgaaaagaatattttaaaggacgccgtaaagctggaacccaaacgc
caggtggatacccgcctggtttatatcttagaagacctacctggaattaccggcgtgtat
tattttcataattcagacggggatattatttatatagggaaaagtaagaatattaaaaaa
cgcgtcacgcagcattttaccagcgagcaacacaaagcgcggcaactccaaaaagaagtt
tcttcggtaagttatgaagccacaggtaatgaactcgccgccttattaaaggaaaatcag
gaaataaagcataacaaacccaagtataataaagctttaaagaagaatatttttagccac
gcgctttatcattctacagatgagaatgggtatatcaatctttatattggcagagccggc
aaaaagaacagtatcactaccttttcttccctaaaaagagccaggaatgtattagaaacc
tggattgtcaaatacgatctttgccataagctttgccacctggaaaaaggagctggaaac
tgctttaattataccataaaaaaatgtaatggtgcgtgcatcaggaaagaacccgttgaa
gcttacaacgaaagggttagagcactaatagatcagcattcttacaaaaaccaacacatg
ttggtgatagaccgcgggcgggaagtagacgaaaaaagtgctttattggttgaagacgga
gaatttaaaggtattggctattttaatttaaatcaccagattaacaatatagatattatt
agatctattataaccccaatgaaaaacgacagggacgcgcagcatattattcagagttat
ttgcgccgtaattccaggttaaaaattgttcagttagatccattggccaaataa
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