Salegentibacter mishustinae: LDL76_14655
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Entry
LDL76_14655 CDS
T07820
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smis
Salegentibacter mishustinae
Pathway
smis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL76_14655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smis03019
]
LDL76_14655
03009 Ribosome biogenesis [BR:
smis03009
]
LDL76_14655
Enzymes [BR:
smis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDL76_14655
Messenger RNA biogenesis [BR:
smis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDL76_14655
Ribosome biogenesis [BR:
smis03009
]
Prokaryotic type
rRNA helicases
LDL76_14655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UBZ06588
LinkDB
All DBs
Position
complement(3150461..3151762)
Genome browser
AA seq
433 aa
AA seq
DB search
MQTKNLQEILKKLEISQLNAMQQEAYKTIVENQNTVLLSPTGSGKTLAFLLPLLEDLDPN
LAKVQAVILVPSRELAIQIEQVTREMGAGFKANAVYGGRAFSKDKLELQHAPAILIGTPG
RIADHFRRETFATKYTKTLVLDEFDKSLEVGFENEMKEIIAALSGLEKRILTSATQNIEV
PGFVGLRNPKSINYLKGEQPSLEVKTIDVNPKKKLESLVHLLFGKAKGSGIIFCNYKDSI
AEVSDFLQKNRIEHGIFSGGMEQKDRERSLIKFRNGTHRLLIATDLAARGIDVPEIDFII
HYQLPFKASEFTHRNGRTARMHQEGIAYVLSERKKLPDFIETNDYKIQEAKSNADVVAKT
TLFISGGRKDKISKGDIAGLFLKQGNLKKDELGLIELKQDCAFVAVPEKKAEELIGLLNN
SKLKKKKIRVRYV
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactaagaatttacaggaaatcctgaaaaaattggagatttctcagcttaatgct
atgcagcaggaagcttataaaacaattgtagaaaaccaaaatacggttttactatcaccc
accggatctgggaaaacattagcatttttattacccttgctggaagatttagatccaaat
ttggcaaaggtgcaggctgtaattttagtgccttcaagagaactggctattcaaatagag
caagttaccagggaaatgggagccggctttaaagcgaatgcagtgtatggcggaagggct
ttttctaaagataaattagaactacaacacgccccggcaatattaattggtaccccggga
agaattgccgaccattttaggagagaaacctttgctacaaaatacaccaaaactcttgtt
ttagatgaatttgataaatctttagaagtaggttttgagaatgaaatgaaagaaattata
gcagcactttcaggtttagaaaaacgtattcttacatctgctacacaaaatatagaggtt
ccaggatttgttggtttaagaaatcctaagagcattaattatttaaaaggagaacaacct
tcgttagaagttaaaaccattgatgtaaatccaaaaaagaaactggaaagcctggttcat
ttactgttcgggaaagccaaaggttcaggaattattttttgtaattataaagatagcatt
gccgaagtgagtgattttctgcagaaaaaccgaattgaacacggtatattttcaggagga
atggagcaaaaagacagggaaagatctcttatcaagttcagaaatggaactcataggttg
cttatcgctacagatcttgctgcaagaggtatagatgtacccgaaattgattttataatc
cattaccaattaccttttaaagcttcagaatttacacatagaaacggccgtaccgccagg
atgcatcaggaaggtattgcctatgtgctttctgaaagaaaaaaactgcccgattttatt
gaaaccaatgattataaaatccaggaagcaaaaagcaacgccgatgttgttgcaaaaact
acgctatttatttccggaggtagaaaagataaaatttcaaaaggagatatcgccggcctt
tttcttaaacagggaaatcttaaaaaagatgaactaggccttattgaacttaagcaagat
tgtgcatttgttgctgttccggagaaaaaagcggaagaacttattggcttgctcaataat
tctaagctaaaaaagaaaaaaataagagtgcgatatgtttaa
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