Sphingobacterium mizutaii: 4412673_00235
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Entry
4412673_00235 CDS
T05395
Name
(GenBank) Eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smiz
Sphingobacterium mizutaii
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smiz03032
]
4412673_00235
03400 DNA repair and recombination proteins [BR:
smiz03400
]
4412673_00235
Enzymes [BR:
smiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
4412673_00235
DNA replication proteins [BR:
smiz03032
]
Prokaryotic type
DNA Topoisomerases
4412673_00235
DNA repair and recombination proteins [BR:
smiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
4412673_00235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Post_transc_reg
UN_NPL4
Motif
Other DBs
NCBI-ProteinID:
SNV37664
UniProt:
A0AAJ4X870
LinkDB
All DBs
Position
1:complement(254216..255223)
Genome browser
AA seq
335 aa
AA seq
DB search
MEAKKPFKYVNSNSKGFSRIHNGEVFEYHDKKKVRIVDPAVLSRIHSLVIPPNWTDVWIC
PNKNGHIQATGLDNRQRKQYIYHPLWTAFQEQDKFSRLYLFGKSLPVLKKQLEKDIKRDL
CDQRFVCALAIMIIQHTSIRPGNTIYRNSNGSFGLTTLQNRHVKLHPGKVILRYRGKKGV
KQEKTFRNKRLYDKVEKILQLSGNQFLQYLDEKNIKRAIKPCHLNSYLSEIYGGEVTSKT
IRTWNACFLALLHLLETFPENTKNRNKSCRVLVSYVAHVLGNTPSVARKNYICPVILKKF
AEGSLDGWMRRYANIANRDKDTIVQKKLLMLLKEC
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaagaaaccttttaaatatgtaaacagcaattcaaagggattctctaggatc
cacaacggtgaggtatttgaataccacgacaaaaaaaaggtgaggatcgtggatccagcg
gtcctatctcggatccattcccttgtgatccctccaaattggaccgacgtatggatctgt
ccgaataaaaatggtcatatccaggctacgggcttggacaataggcagcgaaagcaatat
atctaccatccgctctggacagcttttcaggaacaggataaattcagcagactatatcta
ttcggaaagagcctgccagtcttgaaaaaacagttggaaaaggatatcaaaagggacctg
tgtgaccagagatttgtctgtgcactggccatcatgatcatccagcacacctccatacgg
ccagggaataccatctatagaaattccaatggttcctttggtcttaccacgctccagaat
agacatgttaaattacatccaggaaaggtaatattgagatataggggcaagaagggcgta
aagcaggagaaaacatttaggaacaaaaggctgtatgacaaggttgaaaagattttgcag
ctctctggaaaccagttcctccaatacctggatgaaaagaatatcaaaagggccataaag
ccatgccatctgaacagctatctttctgaaatatatggcggggaggtgaccagtaaaacc
attagaacgtggaatgcatgttttttggctctgttgcatcttttggaaacctttcctgaa
aacaccaagaacaggaacaaaagttgcagggtgcttgtcagttatgtcgcgcacgttttg
ggaaacacgccatcggtggcacgaaagaactacatctgtcccgttatcttaaaaaagttc
gcagagggcagtcttgacggctggatgaggaggtatgcaaacattgcaaacagggataag
gataccattgtccaaaaaaagctcttgatgctattgaaagagtgttag
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