Sphingobacterium mizutaii: 4412673_01206
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Entry
4412673_01206 CDS
T05395
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smiz
Sphingobacterium mizutaii
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smiz03016
]
4412673_01206 (rtcB_1)
Enzymes [BR:
smiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
4412673_01206 (rtcB_1)
Transfer RNA biogenesis [BR:
smiz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
4412673_01206 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
4412673_01206 (rtcB_1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SNV46258
UniProt:
A0AAJ4XAY6
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All DBs
Position
1:1377011..1378411
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AA seq
466 aa
AA seq
DB search
MGNLRTKDLSKIGYQNDQLRSLVINIASKNFKHHSKQELLDLLVEIKNNPEAFLENEETK
KIAEKIIGKVKEQNFKVYELREEPIPCKIYGSKGIESSAKKQMEIACMLPVSVQGALMPD
AHMGFGLPIGGVLATEQAIIPYAVGMDIGCRMALSILDAAAGFTKKYEYQIVQAIKNHTH
FGMEGGLEIRQDHEILDHSLFNELPFLKPLRGKAARQLGTSGNGNHFVEFGEIELMENNG
LGLEPKVYTALLTHSGSRGLGAAIAKQYTQIAMESCKLPRHAQQLAWLDMESEAGQEYWL
AMNLAGDYAKACHDRIHKNLLSALGLKAMAMVENHHNFAWKDVLSDGKETIIHRKGATPA
HQGELGIIPGSMTTAAYLVSGRGIENALNSASHGSGRAMSRQKANDNMTNSAMKKLISSA
NVKLIGGSVEENPLAYKDIEQVMLSQRELVDIQGKFIPKIVRMHKE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatttaagaacaaaagatttaagtaaaataggttatcagaatgatcagctcaga
agcttggtcattaacatagccagcaaaaatttcaaacatcacagcaaacaagaattgctt
gacttgcttgtggaaattaagaataatccagaggcatttttggaaaacgaagagaccaag
aaaatagcggaaaagattattggaaaagtgaaagaacagaatttcaaggtttatgaatta
agagaagaaccgattccctgcaagatttatggaagtaagggcattgaatcttctgcaaag
aagcagatggaaatagcctgtatgttgccagtaagtgttcagggagcattgatgccagat
gcgcacatgggatttggattgccaattggaggggtcttggctaccgaacaagccataatt
ccatacgctgtgggaatggatattggatgtcgaatggcactctctattctcgatgctgca
gcaggttttaccaaaaagtatgaataccagattgtgcaagccattaaaaaccatactcat
ttcggtatggaaggaggcctggaaatcagacaggaccatgagatcttggaccattccctg
ttcaatgaactgccttttctcaaaccattgcgaggaaaggccgccagacaattagggact
tcgggcaatgggaatcactttgtagaatttggtgaaattgagttaatggaaaataatggt
ctcggtttggaacccaaggtctataccgctttgctcacgcattctggaagtcgtggattg
ggtgcagccattgctaaacagtatacccaaatcgctatggaaagctgtaagttacctcgc
catgcacagcaattagcctggctggacatggagtcagaagctggacaggaatattggtta
gccatgaatttagccggtgattatgccaaagcttgccatgaccgtatccataaaaaccta
ttaagtgcgttgggactgaaggcaatggcgatggtggagaatcatcataattttgcttgg
aaagatgttctttcggatggtaaagagaccataatccatcgcaaaggcgcaacaccagcc
catcaaggggaattaggaatcatccccggtagcatgacaacagccgcatatttagtgtca
ggcagaggaattgagaatgccttaaattctgcttcccatggctctggacgtgcaatgagc
cggcaaaaagccaatgataatatgactaactctgccatgaaaaagctgatttctagtgca
aatgtcaaactgatcggaggatcagtagaggagaaccctctggcttacaaggatattgaa
caggttatgctttcccaaagagaacttgttgatatccaaggaaagtttatcccgaagatt
gttagaatgcataaggagtaa
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