Sphingobacterium mizutaii: 4412673_01351
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Entry
4412673_01351 CDS
T05395
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smiz
Sphingobacterium mizutaii
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smiz03016
]
4412673_01351 (rtcB_2)
Enzymes [BR:
smiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
4412673_01351 (rtcB_2)
Transfer RNA biogenesis [BR:
smiz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
4412673_01351 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
4412673_01351 (rtcB_2)
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Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SNV47257
UniProt:
A0AAJ5BZL9
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All DBs
Position
1:1535500..1536921
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AA seq
473 aa
AA seq
DB search
MENKRINGNDLVALGYKENLAIGVALKINKKRLGFSKEEMLEKFKAVLDDPKAFAEDAIF
SPLSFALLNIEELEKFNVPLKTEELPYEVYGAEHIEDGAMKQMKTAMKLPVTVAGALMPD
AHQGYGLPIGGVMGTKNAVIPYGVGVDIGCRMALSIFDLPASYVDTHRDELKKILLKTTR
FGAGNGFLKHERLDHEVFENEQFEDNPFVKQLKDKAWTQLGSSGGGNHFVEFGIMEFKET
DQELGIPKGEYLALLTHSGSRGLGAMIANHYTKLAMQVCKLPHEAKHLAYFDLDSAEGQE
YWLAMNLAGDYASACHGVIHEKVLSELGAVRLTKVENHHNFAWKEMWKGEELIVHRKGAT
PAAKGVMGIIPGSMAAPGFLVRGRGEEEAINSASHGAGRLMSRTQAIKTLSRKDLNKRLE
DLGISLIGADLDEAPMAYKNIHEVMDAQKELVDVVASFHPKVVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaaagaataaatggtaatgatttagttgccttaggatataaagagaattta
gccattggcgtggcgctgaagatcaataagaagcgattgggttttagcaaggaggaaatg
ttggagaagttcaaagccgtattggatgatccaaaggcttttgctgaagacgccatattt
tcaccgctatcctttgccctgttgaatatagaagaattggagaaattcaatgttcccttg
aaaacggaagagctgccgtatgaagtatatggcgcggagcatattgaggatggcgctatg
aaacaaatgaaaacggcgatgaaattgcctgtaacagttgctggtgcgctgatgcctgat
gctcaccaaggctatggattgcctattggtggcgttatgggaacgaaaaatgcggtcatt
ccttatggtgtcggtgtggatatcggttgccgtatggccctttctatttttgatcttccg
gctagctatgtggatacccatcgtgatgagctgaaaaagatcttgctgaaaaccactcga
tttggtgctggtaacggttttttgaaacatgagcgcctagatcatgaggtctttgaaaac
gagcagtttgaggacaacccttttgtgaagcaattaaaggacaaggcttggactcagttg
ggatcttctggtggtggaaatcactttgtggaatttgggatcatggagtttaaggagacg
gatcaggaattggggattccaaaaggggaatatctggctttgttgacgcattctggttct
cgaggtttgggagcaatgattgccaatcactataccaaattggcgatgcaggtctgtaaa
cttcctcatgaggcgaagcatttggcgtatttcgacttggattctgctgaagggcaagag
tattggttggccatgaacttagcgggagattatgcatcggcctgtcatggagtgatccat
gaaaaggtgctttcggaattgggcgccgtacgattgacgaaggtggaaaaccaccataac
tttgcatggaaggagatgtggaaaggcgaggagctgatcgtccaccgaaaaggtgctaca
ccagcggcaaagggtgtgatggggattatcccgggatcgatggctgcacctggattcttg
gtccgcggtagaggggaggaagaggctatcaattcggcttcacatggggctggacgattg
atgagccgtacccaagcgataaagaccttgtcccgaaaggatttgaacaagcgattggag
gatttagggatcagcttgattggagctgatttggatgaagcgccaatggcttataagaac
atccatgaggtcatggatgcccaaaaagaattggttgatgttgttgcttcattccatccg
aaggtcgtccgaatggcggacgatgggtcccgagaggattag
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