Sphingobacterium mizutaii: 4412673_01382
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Entry
4412673_01382 CDS
T05395
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smiz
Sphingobacterium mizutaii
Pathway
smiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4412673_01382 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smiz03019
]
4412673_01382 (rhlE_2)
Enzymes [BR:
smiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4412673_01382 (rhlE_2)
Messenger RNA biogenesis [BR:
smiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4412673_01382 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Utp25_C
P-loop_SecA
CMS1
AAA_22
Flavi_DEAD
DUF3419
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SNV47534
UniProt:
A0AAJ5BZN0
LinkDB
All DBs
Position
1:complement(1571179..1572285)
Genome browser
AA seq
368 aa
AA seq
DB search
MNFNNMELIAPIIKALDSLGYKSPTDIQSQAIPFILKGKDIIGCAQTGTGKTAAFSIPIL
QKCAGQRSNSKAPKALILAPTRELAIQIEKTFSDLNKYLGLRPLVVFGGVPINRNIKALQ
HPVDILIATPGRLLDLINQKYISLSNISTLVLDEADTMLDMGFIHDIKRILKFVPEKRQT
LFFSATMPTEIRKFANTILNNPAEININPVVKASENVNQSVFFIEKKQKTDLLVDLLNRD
KNLQTLVFIRTKHAADRLAKQLNKRGFKADAIHGNKSQNARQNALESFKTGKSKILIATD
IAARGIDIHKLPQVINYDLPSESETYVHRIGRTGRAGNAGHAYSFCSEDEKKALNGIQKL
IGFQLATN
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaacaatatggagttaatcgctccaatcataaaagcactcgacagtcttggc
tacaagagccctacggatatacaatcacaagcaataccatttattttaaagggaaaagac
atcatcggatgtgcacagacaggaacaggaaaaactgcagcttttagcattcctatccta
caaaaatgtgcgggccaaagatctaattccaaagctccaaaagccttgatcttagcgcct
actcgcgaattagcgatccagattgaaaaaacctttagcgatttaaacaaatatcttgga
ctaaggcctttggtcgtattcggcggtgtccctatcaacagaaatattaaagcactgcaa
catccagtggatattttgattgcaacgcccggtaggttattggacttaatcaatcaaaag
tatatttccttaagcaacattagtacccttgtattagacgaggcagataccatgttggat
atgggttttatccatgacattaagaggatcctgaaatttgttccggagaaaagacagaca
ttgttcttttcagcaaccatgcctactgaaatcaggaagtttgccaatacgatcctaaat
aacccagcagaaataaacatcaaccctgttgtgaaagcttcggaaaatgtcaaccaatcc
gtattctttatcgaaaagaaacagaagacagatttattggttgatctattgaaccgtgac
aagaatctacaaaccttggtctttatccgtaccaagcatgctgcggatagattggcaaag
caattgaataaaagaggcttcaaggcagatgccatccatgggaataaatcccagaatgca
agacaaaatgcattggaatcttttaagactggaaaatccaagatcttgatcgcaacggat
attgctgctcgtggcattgatatccataaattaccgcaggtcatcaattatgatctcccc
tctgagtctgaaacctatgtgcataggatcggtagaacaggaagggcaggaaatgcggga
catgcttattctttctgtagtgaagatgagaaaaaagcattaaacggaatccaaaaactg
attggcttccaactagcaacgaattaa
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