Sphingobacterium mizutaii: 4412673_01817
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Entry
4412673_01817 CDS
T05395
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
smiz
Sphingobacterium mizutaii
Pathway
smiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4412673_01817 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smiz03019
]
4412673_01817 (rny)
Messenger RNA biogenesis [BR:
smiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
4412673_01817 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
crAss001_48
MctB
UPF0154
Motif
Other DBs
NCBI-ProteinID:
SNV49578
UniProt:
A0AAJ5C033
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All DBs
Position
1:2077773..2079332
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AA seq
519 aa
AA seq
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MEFFTTISIIISLVVGVFIGRYLLQMLFKKQEQSANEKAAQIVKDAEQQADHIKKQRQLE
AKEKFLQLKAEHEKEVNQKNNTISQKENTIRQKEQSLNQKLENLNREKQDLDNKTKKLDQ
MIEFNDKKKEEVEQLKGQHIKQLESMAGLSAEEAKEQLVNSLREEARSQAIMQIKDIVDE
AKLTASKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSGFDPVRREIARLSLHRLVTDGRIHPARIEEVVAKTRTQIEDEIVE
IGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMAAELGLNVKHA
KRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTSMISPIVQ
ACDAISGARPGARREVVESYIKRLKELEDLALSYPGVEKTFAIQAGRELRVVVESEKVSD
AQAEILAADISNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtttttcactactatatcaataataatttcactggttgtcggtgtttttattgga
cgatatctattacagatgttgttcaagaaacaggagcaatcggcgaatgaaaaggctgcc
caaatcgtaaaggatgcagagcagcaagcagaccatataaaaaagcagcgtcagttagaa
gcaaaagagaagtttttgcaattgaaggctgaacatgaaaaagaagtaaatcaaaaaaat
aataccatctcccaaaaagagaataccattcgtcaaaaagaacaatcattgaaccagaaa
ttggagaatctaaatcgtgaaaaacaggatttggataacaagaccaagaaactggatcag
atgattgagttcaatgacaagaagaaggaagaggtagaacagttaaaaggccaacatatc
aagcaattggagagcatggccggtctttcagcagaggaagctaaggaacaattagtgaat
tcattgcgtgaagaggctcgttctcaagcgatcatgcagatcaaggatattgttgatgag
gctaaattgacagcatcgaaagaggctaaaaaggtagttatccaaactatccaacgtact
gcaacagaatcggcaattgaaaacacggtatctatctttaacattgaaaatgatgagatc
aagggtcgtattattggacgtgaaggtcgtaacattagagctttagaggcagctacaggg
gttgagattatcgttgatgatacgcctgaagcgattatcctttctggctttgatccagtt
cgccgtgagattgcgcgtttatctttacatagattggttacggatggtcgtatccacccg
gctcgtatcgaagaggtcgtggctaaaacacgtacgcagatcgaggatgaaatcgttgaa
atcggtgaacgtacggttatcgatttagggattcatggtctacacccagaattgatcagg
atggtgggtagaatgagatatcgttcttcttatgggcagaacctattacagcactctcgt
gaggtagctaattttgcggcgactatggctgcggaattggggcttaatgtgaaacatgcg
aagcgagcaggattgctgcacgatattgggaaggtgcccgatgataatccggaattgcct
cacgcgatcttgggaatgcaattggcagagaaatataaggaacatcctgatgtttgcaat
gccatcggtgcgcaccacgatgagatcgagatgacctctatgatttctcctatcgtccaa
gcctgtgatgctatttcaggtgctcgtccaggagctagacgtgaggttgtggaaagttac
atcaaacgtttgaaagaattggaagatttagcattgtcttatccaggtgtggagaaaaca
ttcgctatccaagcaggacgtgaattacgtgttgtggtagagagtgaaaaagtatctgat
gcacaagctgaaatcttggcggcagatatttcaaaccgtatacagacagaaatgacttat
ccaggtcagattaaagtgacagttattagagagacccgatcggtttcttatgcgaaataa
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