Sphingobacterium mizutaii: 4412673_03000
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Entry
4412673_03000 CDS
T05395
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smiz
Sphingobacterium mizutaii
Pathway
smiz03420
Nucleotide excision repair
smiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4412673_03000 (pcrA)
03430 Mismatch repair
4412673_03000 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smiz03400
]
4412673_03000 (pcrA)
Enzymes [BR:
smiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4412673_03000 (pcrA)
DNA repair and recombination proteins [BR:
smiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
4412673_03000 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
4412673_03000 (pcrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
AAA_11
DEAD
AAA_22
YecM
Motif
Other DBs
NCBI-ProteinID:
SNV53960
LinkDB
All DBs
Position
1:complement(3389006..3391291)
Genome browser
AA seq
761 aa
AA seq
DB search
MDFLAGLNPSQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFNVLVLTFTN
KAAKEMRERIMKVVGSEAKNIWMGTFHSVFARILRVEAELLGYPKNFTIYDTDDTKSLLR
TILKEMNLDDKLYNVNHVYGRISSAKNNLISPQEYNKNEAILAEDQSNGRGQLGQIYMAY
AQRCYRAGAMDFDDLLFKTNVLLNKYPEVLHKYQHQFKYLMVDEYQDTNFSQYLIVKRLA
AVNENICVVGDDAQSIYAFRGANIQNILNFQKDYPDVKVFKLEQNYRSTKMIVNAANSII
ANNKNQLEKNVFSDNEDGEKIKVSRAFSDNEEGKIVAEAISQEKSLKGLRYKDFAILYRT
NAQSRSLEEALRKLNIPYKLYGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRR
GIGDTTVEKIMVAADQQQLRLWDVVANSQMFLDGRSAASVSNFGLMIQSFQATAKTNTAF
DTAMHIAQHSGILKDLYEDKSVEGLARYENIQELLNGIKEFSEREDLEEKGLDVFMQDIA
LLTNDDNDKDPNADTVSLMTIHASKGLEFPVVHIVGLEENLFPSQLSLNSRSELEEERRL
FYVAVTRAEKKLHISYATSRYRWGTLNNCEPSRFLDELNPSCLDLDFKPRGGAMMDDDFG
SERVQWQRKENITSGDVFSKPKPKVVKTTSILPKAHKPSADFAPSDTSGLQVGMEVEHER
FGFGKVINLEGNKPDVKATIFFKELGQKQLLLKFAKLRIVN
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttggattttttagcaggactgaacccctcacaacgagccgcagttgaacaaacagaaggt
ccagtgatgattgttgctggagcgggatctggaaaaacgcgtgtaattacctatagagta
gcccatttgatacaaaaaggagttgatcctttcaacgttctggtgctgacctttaccaac
aaggcagccaaggaaatgcgtgaacgtatcatgaaggtggtaggctctgaagccaagaat
atatggatgggtacattccactcggtgtttgcgcgaatcttgagggtcgaagcagaactt
ttgggatatcccaagaactttaccatctatgatacggatgataccaagagcctattgcgg
accattttgaaagagatgaacctggatgacaagctctataacgtgaatcatgtttatggg
aggatttcatcagcgaaaaataatttaatttccccacaggaatataataagaacgaagcg
atccttgccgaggatcaatcaaatggaagaggacagttgggtcagatctatatggcttat
gcacagcgttgttaccgtgctggagcgatggattttgatgatttgctgttcaagaccaat
gtgttgctcaataaatatccggaggtattgcataaatatcagcatcagtttaaatacctg
atggtggatgagtaccaggacaccaacttttcgcagtacttgatcgtgaagagactggcc
gcggtgaatgagaacatttgtgtggtaggtgatgatgcgcagagtatctatgccttccgt
ggcgctaacatccagaacatcttgaatttccaaaaggattatccagatgtgaaggtgttc
aaattagaacaaaactaccgttcgaccaagatgatcgtgaatgctgccaacagcattatt
gccaacaacaagaatcaattggaaaagaacgtgttctctgataatgaggatggtgagaaa
atcaaggtaagtcgagccttttcggacaatgaggaaggaaagatcgtggctgaagccatc
tcgcaggaaaaatctctgaaaggattgaggtataaggatttcgctattctctatcgtaca
aatgcccaatccaggtcattggaggaggctttgcggaaattgaatatcccttacaaattg
tacggaggaacttccttctatcaacgtaaggaaattaaggatttaattgcttattttagg
ctgacattcaacccgaacgatgaggaggccctgaaacgtgtgatcaactatccgcgcaga
gggatcggtgatacgactgttgaaaagatcatggtggctgccgatcaacagcaattgcgc
ttgtgggatgtggtagctaattcccaaatgttcttggatggaaggagtgcggcatcggtt
tctaattttggattgatgatccagagtttccaggcgaccgcaaaaaccaacacggcattt
gatacggccatgcacattgcacagcattctgggatcctgaaggatctatatgaagataaa
tctgttgaaggtctggccaggtatgagaatatccaggaattattgaatggtatcaaggag
ttttcggaaagggaagacctggaagagaaaggtctggatgtctttatgcaggacattgct
ttgctgactaatgatgacaatgataaggatccgaatgcggatacggtttcattgatgacc
atccatgcttcaaagggattggagtttccagtagtccatatcgtagggctggaggaaaac
cttttcccatcgcagctttcgttgaattctagatcggaactggaggaggagcggaggttg
ttttatgttgctgttacacgggcagagaagaaattgcatatttcgtatgcaacatctcgc
taccgttggggaaccttgaacaattgcgagccgagcagatttttggatgaattgaatcca
agctgtctggatctagacttcaaacctcgtggaggggcgatgatggatgatgattttggc
tcggaaagggtacaatggcaacgtaaggagaacattacaagcggtgatgtattctcgaaa
ccaaagccgaaagtggtgaaaacgacctcgattttgcctaaggcgcacaagccgagtgcg
gactttgcaccatcggatacttcgggtctacaggttggtatggaagttgaacatgaacgc
tttggatttggcaaggtaattaacctggaaggaaacaaaccggacgtaaaagcaactatt
ttcttcaaagagttgggacagaagcaattgttgcttaaatttgccaagcttagaatagta
aattaa
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