Streptococcus mutans LJ23 (serotype k): SMULJ23_0006
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Entry
SMULJ23_0006 CDS
T02086
Symbol
trcF
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smj
Streptococcus mutans LJ23 (serotype k)
Pathway
smj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMULJ23_0006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smj03400
]
SMULJ23_0006 (trcF)
Enzymes [BR:
smj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMULJ23_0006 (trcF)
DNA repair and recombination proteins [BR:
smj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMULJ23_0006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAL68340
LinkDB
All DBs
Position
5236..8733
Genome browser
AA seq
1165 aa
AA seq
DB search
MGKMNLIDLFKQNQKIKEWTEHLSAPTRQLVMGFSSSSKALAIAAAYKQQKGKIVIVTST
QNEAEKLATDLISLIGEEEVYQFFADDVAAAEFIFASQDRTNSRVESLNFLLDKEKSGIL
MTSIVGIRILLPSPQNYQAAQFKLKVGEEYNLDNIIKQLSNIGYQKVAQVYNPGEFSKRG
DILDIYEINQPYPYRLEFFGDEIDGIRTFDPDDQRSLSNLDSFILIPSDDIILTDSDFDQ
ACYNLEKALITANDSLQPYLKEVLSVTKDHYRHQDVRKFLSFFYQKEWTLLNYLPEQTPL
FFDDFQRIIDRNSRFDLDIANLLTEDLQNSKAVSSLSYFANNYKDLRHYQPATFFSNFHK
GLGNLKFDYLYNFTQYPMQEFFNQFPLLIDEIKRYQKSEMTVLLQTDSQQSQGRLQKALQ
GYNFNLPISQVDNLLKKKAQLTIGNLSTGFYFADEKLVLITEREIFHKKVKHKRRRSYIS
NAERLKDYNELEKGDYVVHNVHGIGRFLGIETIEVSGVHRDYLTIQYQNADRISIPIEQI
ELLSKYVASDGKEPKINKLNDGRFQRVKQKVSKQVEDIADDLLKLYAERSQLKGFAFSPD
DKNQEEFDNDFAYVETEDQLRSIKEVKKDMEKDQPMDRLLVGDVGFGKTEVAMRAAFKAV
NDDKQVAVLVPTTVLAQQHYNTFKERFENFPVNIAMMSRFKTKAEQFETLTKLSKRQVDI
IIGTHRLLSKDVTFKDLGLLVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMS
MLGIRDLSVIETPPSNRYPVQTYVMETNASVIREAIMREIDRGGQIFYIYNRVDTIDKKV
AELRELIPEANIGFVHGKMSEIQLENTLLDFISGEYDLLVTTTIIETGIDISNVNTLFIE
NADYMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKILTEVSEKRLEAIKGFTELGSGFKIA
MRDLSIRGAGNILGSSQSGFIDSVGFEMYSQLLEEAIAAKQGQRKTRSKGNAEINLQIDA
YLPTNYISDERQKIEIYKRIREIESKTDYQALQDELIDRFGDYPDQVAYLIEIGLLKAYL
DDAFVESLDRKQNSVVVCFEKISLKFYLTQDYFEALSKTNLKARISENKGKIEIVFDVRA
KKEYEILEELIKFGKILKKLKDKKK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagatgaatttaatagatttatttaaacaaaatcaaaaaattaaagagtggaca
gaacatctctctgctcctactagacaattagtaatgggattttcaagctctagtaaagct
ttggcaatagcagctgcttataagcagcaaaagggaaagatagtaattgtgacgtcaact
caaaatgaggctgaaaaacttgcaactgatttaattagcttaattggtgaggaagaagtt
tatcaatttttcgctgatgatgttgcagcagcagagtttatttttgcatcgcaagataga
acaaattctcgtgtagaaagccttaattttcttttagataaagaaaaatcaggaatttta
atgacaagtattgttggtataaggattttacttccaagtccccaaaattaccaagcagct
caatttaaattaaaagttggtgaagaatataatcttgacaatattatcaagcaactgtca
aatattggttatcaaaaagtagcacaagtttataatcctggagaatttagtaaaagaggg
gatattttagatatttatgaaatcaatcagccctatccttatcgtcttgaattttttgga
gatgaaatagacggcattcgcacttttgatcctgatgatcaaagatcccttagtaatctg
gattcttttattttgatcccatctgatgatatcatcctgacagatagtgattttgatcaa
gcctgttataatttagaaaaagcacttattactgcaaatgatagtttacaaccttattta
aaagaggttttatctgttacgaaagatcattaccgtcatcaagatgttagaaagttttta
tcctttttctatcaaaaagaatggactcttttaaattatctacctgaacaaacaccacta
ttttttgatgattttcaaagaattattgatcggaatagtcgttttgatttggatattgct
aaccttttgacagaagatttacaaaatagtaaagcagtgtcaagtttatcttattttgct
aataattacaaagatttaagacactatcaacctgcgacctttttttctaattttcataaa
ggtttaggaaatcttaaatttgattatctctataactttacacagtatccaatgcaggaa
ttttttaatcaatttcctttattaattgatgaaattaaacgttatcaaaaatctgagatg
actgttcttttacaaacagattcacagcagagtcaaggacgtttacaaaaagctttacag
ggatataatttcaatttaccaattagtcaagttgataatctgttaaaaaagaaagctcag
ttaacaattggaaatctttcaactggtttttattttgctgatgaaaagcttgtcttaatc
actgaaagagaaatttttcataaaaaagtaaagcataaacgtcgtcgttcatatattagt
aatgctgagcgtcttaaggattacaatgaattagaaaagggagactatgttgttcataat
gtgcatggcataggacgttttttagggattgaaacgattgaagtgtcaggtgttcaccga
gattatttaaccattcaatatcaaaatgctgatcgtatttccattcctattgaacaaatt
gaactcctttcaaaatatgttgctagtgatggtaaagagccaaagattaataaacttaac
gatggccgttttcaaagggtaaagcaaaaagtatcaaagcaagttgaagatatagctgat
gatcttttaaaactttatgctgaacgcagtcaattaaaaggttttgctttttctcctgat
gataaaaatcaggaagaatttgataatgattttgcttatgttgaaactgaagatcaatta
agatccattaaagaagtcaaaaaggatatggaaaaagaccaaccaatggatcgtcttctt
gttggtgatgttggttttggaaaaacggaagtagcaatgagagctgcttttaaagcagtt
aatgatgataaacaagttgctgttttggtgccaacaacagttcttgctcaacagcactat
aatacttttaaggagcgctttgagaattttcctgtcaatattgccatgatgagtcgtttt
aaaaccaaggctgaacagtttgaaaccttaactaaattatctaaaagacaggttgatatc
attattggaacacatcgtctactttctaaagatgttacgtttaaagatcttggtttgctt
gttattgatgaagagcaacgattcggggttaaacacaaggaaacattgaaagaattaaaa
actaaggttgatgtcttgaccttgacagcaactcctattccacggacattacatatgtca
atgcttggtatacgagatttatcagttattgaaacacctccaagtaatcgttaccctgtc
cagacttatgttatggaaacaaatgcaagtgtcattcgtgaagctattatgcgtgaaatt
gatcgaggtggacaaatcttttatatttacaacagggttgacacaattgacaaaaaagtt
gctgaactaagagaattgattccagaagccaacattggttttgttcatggaaaaatgagc
gaaattcaacttgaaaatactttactagactttatcagtggtgaatacgatctcctagta
actacaacaatcattgaaacaggtattgatatttcaaatgttaatactctgtttattgaa
aatgctgattacatgggcttgtcaactttgtatcaacttcggggacgtgttggtcgatca
aatcgtattgcttatgcttatcttatgtatcatcctgataagattttaacagaagtgtca
gaaaaacgtttggaagctattaaagggtttacagaacttggttcaggttttaaaattgct
atgagagatttgtctattcgtggtgcaggaaatattcttggttcctctcaaagtggcttc
attgattctgtaggttttgaaatgtattcacagttattagaagaagcaattgcagcaaaa
caaggtcaaagaaaaacgcgttctaagggaaatgctgaaattaatttacaaattgatgct
tatttaccaacgaattatattagtgatgagcgtcagaaaattgaaatttataaacgtatt
cgagaaattgaaagtaaaacagactatcaggctttacaagatgaactgattgatcgtttt
ggtgattatccagatcaggttgcttatctgatagaaatcggtcttttaaaagcttatcta
gatgatgcctttgtagaatcacttgatcgtaagcaaaattcagtagtagtgtgttttgaa
aagatttcattaaaattttatctaacccaggattattttgaagctttgtctaaaactaat
ttaaaagctcgtattagtgaaaataaaggaaaaattgaaattgtttttgatgtgcgagct
aaaaaggaatatgaaattttagaagaattaattaaatttggaaaaattttgaagaaacta
aaagataagaaaaagtaa
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