Sinorhizobium meliloti AK83: Sinme_0014
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Entry
Sinme_0014 CDS
T01521
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk02020
Two-component system
smk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sinme_0014
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sinme_0014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smk03021
]
Sinme_0014
Transcription machinery [BR:
smk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sinme_0014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AEG51789
LinkDB
All DBs
Position
1:complement(12164..13708)
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AA seq
514 aa
AA seq
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MALSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTIS
DREDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADA
PELLGQWKSMPGAGDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYFIDQLD
DAGYLHADLAETAETLGAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNRLDPA
MEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFEAIIPDV
VVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNANWLTRSL
DQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSNKYMLTP
RGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVLKQAGVD
IARRTVAKYREAMSIPSSVQRRREKRALAKAAGF
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtccgccagccttcatctgagacagtcgcagtcgctggtcatgacgccgcag
ctgatgcagtcgatccagctgcttcagatgaaccatctggagctcagccatttcatcgcg
caggaagtcgagaagaacccgctgctggaggtccagccggccgatgagccaacgatatcg
gatcgcgaggatgccggtccgcatccggcggagaccggcggcgaaaccgacgaggcggca
ggtcagagcgacctttacgacagcgccatgtcgagatccggcgagaggctcagcgaaggc
cttgacgccgacttcgccaacgtcttccccgacgatacggcgccgcagcgggcggatgcg
cccgagcttctcggccaatggaaatccatgccgggtgccggcgacgcagagggatacgat
ctcgacgatttcgttggcggccgcaagacgttgagggagacgctcgccgagcagctgccc
ttcgcactcagcgctgtctccgatcggctgatcgcccggtatttcatcgaccagctcgat
gatgccggctacctgcacgccgacctcgccgagaccgcggagacgctgggcgcggcaggc
gaggacgtggcgcgcgtgctgcacgtgcttcagcagttcgatccgccgggcgtcttcgcg
cgcacgcttggcgaatgtcttgccattcagctgcgcgcccgcaatcgtctcgacccggcg
atggaagcgctcgtggccaatctcgagctcctggcacggcgcgatttcgcaagcctcaag
aagatctgcggcgtcgacgaggaagacctgatcgatatgctcgccgagatccgcaagctc
gatccgaaaccgggcaccagcttcgaaaccggtgtgttcgaggccatcattcccgacgtc
gtcgtgcgcgccgcacccgatggcggctggcttgttgagctcaatccggatgccctgccc
cgggttctcgtcaaccacgactatttcacagaaatatcgcgctccagccggaagaacagc
ggcgaacaggcctttctcaacgagtgcctgcagaatgccaactggctgacgcgcagcctc
gatcagcgcgccaggacgatcatgaaggtggcgagcgaaatcgtccggcagcaggacgcc
ttcctcatccacggcgtcggccacctgcgcccgctgaacctcaggatcgtcgcggacgcg
atcaagatgcacgagtcgacggtgagccgggtcacctccaacaaatacatgctgaccccg
cgcgggctcttcgaattgaaatatttcttcacggtctcgatcggctcggcggaaaacggc
gatgcacattcggccgagtccgtgcgccatcgcatccgcacgatgatcaatcaggaaagc
gccgatgccgtgctctcggacgacgacatcgtcgacgtcctcaagcaggccggcgtcgat
atcgccagacgcaccgtcgcaaaatatcgcgaggcgatgagcatcccctcctccgtccag
cgccgccgcgagaagcgggcgctggccaaggccgcgggattctga
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