Sinorhizobium meliloti AK83: Sinme_0062
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Entry
Sinme_0062 CDS
T01521
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sinme_0062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smk03019
]
Sinme_0062
03009 Ribosome biogenesis [BR:
smk03009
]
Sinme_0062
Enzymes [BR:
smk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sinme_0062
Messenger RNA biogenesis [BR:
smk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sinme_0062
Ribosome biogenesis [BR:
smk03009
]
Prokaryotic type
rRNA helicases
Sinme_0062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEG51836
LinkDB
All DBs
Position
1:complement(67521..69413)
Genome browser
AA seq
630 aa
AA seq
DB search
MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP
TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT
LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR
RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR
FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL
ENARITAAWAKPPSADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF
VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN
AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK
TLPGAPDSSRPRQDKPDFEKKRPPATAAEREHKDFKPKRKFDKQPPIAQDAHSDSRGDKP
WSKKKGKPEAQKTGDFKPGAKRNNAKKRQP
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcgcagggatcgcgccggcgatcgccgaggcgttggcaaaacgcggttac
gagacgctgacgccggttcagcaggccatgctggatccgtcgctcggcaccgccgacgcg
ctggtctccgcccagaccggctcgggcaagaccgtggccttcggcttggcactggcgccg
acgctcatcggttcggcaaggaaattcgcgcaggccggcgcaccgcttgcactcgtcatc
gcgccgacgcgcgaattggcgctgcaggtcatgcgtgagctcgactggctctacgagatg
gcgggggccaccatcgcctcctgcgtcggcggcatggacatgcgcagcgaacggcgcacg
ctggaacgcggcgcccatatcgtcgtcgggacgccgggacggctttgcgaccatatccgc
cgtggatcgctcgatatatcgggactgaaggccgtcgtgctcgatgaggccgacgagatg
ctggacctcggcttccgcgaggatctggagttcattctcgaggcgtcgccggcggatcgc
cgcacgctgatgttctccgccaccgtaccgcgctcgatcgcgacgctcgccaagaattac
cagcgtgatgcagtccgcatcggcgtcacctccgagcagaagcagcacggcgacatcgag
taccgctcgctgctcgtggcgccgagcgaccgtgagaatgccatcatcaacgtgctgcgc
ttttacgaagcgaggaacgcgatcgtcttctgctcgacgcgcgccgcggtcaatcatctg
accgcccgcttcaacaatcgcggcttctccgtcgtggcgctctcaggcgagctcagccag
aacgaacgcacccacgcactgcaggccatgcgcgacggccgcgcccgcgtgtgcatcgcg
accgacgttgcggcgcgcgggatcgaccttccgggcctcgagctcgtgatccatgccgac
ctgccgaccaactccgacacgctgctgcatcgcagcggccggacgggccgcgccggccag
aaaggcgtgagcgcactgatcgtgcccgtgaacgcccgccgcaaggccgagcggctgctt
gaaaacgcacggattaccgccgcctgggcaaagcccccgtcggccgacgaggtggcacgt
cgcgacgacgagcgcatcgccgccgatccggcccttgccgaagctccgcgcgaggatgaa
caggcgatcgtcgagacgctgatcagccgctacggggcggaaaagatcgccgcggccttc
gtccggcaattccgctcgaaccgttccgctccggaggaactcgtggatgtcgccgtctac
gacgatcgcaggaaaccccgtcgcgacggcccggctttcacgggtgacagcgagccggct
ccgcgcgcggacttcgccgacggccagtggttttccctctccgtcgggcgcaagcagaac
gccgagccccgctggctgatcccgatgctttgccgttacggcaagctgagcaagcgcgat
atcggcgcgatccgcatgcagcccgaggaaacctatgtcgagatgacggccgacggcgca
gaacgcctccttgccgcgatcggcccgaaccggatgctggaaaagggcattcgcgtcaaa
acccttccgggtgccccggacagctccaggccgcggcaggacaagccggacttcgagaag
aagcggccgccggcgaccgcagcggagcgcgagcacaaggacttcaagccgaagcgcaag
ttcgacaagcagcctcccattgcgcaggatgcgcattcggacagccggggcgacaagccc
tggagcaagaagaagggcaagcccgaagcgcagaaaaccggcgacttcaagcccggtgcc
aaacgcaacaacgccaagaagcgccagccttga
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