Sinorhizobium meliloti AK83: Sinme_1555
Help
Entry
Sinme_1555 CDS
T01521
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sinme_1555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smk03400
]
Sinme_1555
Enzymes [BR:
smk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sinme_1555
DNA repair and recombination proteins [BR:
smk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sinme_1555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEG53294
LinkDB
All DBs
Position
1:complement(1554687..1558196)
Genome browser
AA seq
1169 aa
AA seq
DB search
MIPGFDPRKILAATREITIGPVPTGAEALVLAELARAGAPVAYILSDGQKVADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQR
ISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGS
GEPLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKL
VLDYYDARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNAVRLSPFTEHEG
EARQVVNIEARQGLRWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSL
DRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQDILGDR
LVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADD
AKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKK
EVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSAT
PIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGW
SPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHL
LKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIF
FQRELATPEKRLSGAAMVMTQLAALAKAG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgatacctggcttcgaccctaggaagattcttgcggcgacgcgggaaattacgatcggc
ccggtgcccacgggtgccgaggcgctcgttctcgccgaactggcccgggccggggccccc
gtcgcctatatcctctccgatggccagaaggtcgctgacctcgaacaggtgctcggtttc
gtcgctcccgatatcccggtcctgacgctgccgggttgggactgcctgccttacgaccgg
gtctcgccgagcgccgacacttcggcgcgcaggcttgccgcgctgagcgcgttgatcgcc
caccgcaggaaaccgcatccggcgatcgtgctcgtcaccatcaatgcagcgctgcaaagg
atctcgccgcaggatgtgatcgaaagcctcgccttcacggcacggcccggcaaccagatc
cgcatggacgaccttgccgcccggctggagcgaaacggcttcgaacgggtcccgaccgtg
cgcgagatgggcgaattcgccgtacggggaggcatcctcgatgtctatgtacccggcagc
ggcgagcctttgcgcctcgacttcttcggcgacacgctcgaggcgatccgctccttcgat
cccgcaagccagcgcacgatcgggcaggtccggtccctcgacctcaatccgatgagcgag
gtatccctgacgcccgagacgatcagccacttccgaaagcagtatctttctctcttcgga
gcggcgacgcgcgacgatgcgctttatcaggccgtgtcggagggacggcgctatgccggc
atggagcattggctgccgcttttctacgatcggctcgaaacggtcttcgactatctcgac
ggctttcgcatcgtcaccgaccatctggcgcgcgaggccgcggcagagcgctcgaagctc
gttctcgactattacgacgcacgcctcgcctcggcttcgccgggcaagtctcaggtcacc
cagggcacgccctacaagcccgtgccgccggacatgctctatctcactgcgaaaggcttc
ggcgaagccctgaatgatctcaatgcggtccgcctttcgccctttaccgaacacgagggc
gaagcccgccaggtcgtgaacatcgaagcgcgtcagggcctgcgttgggccaaaccggcg
ggcgaggccgacaacgacggcacgcgcaccaatgttttcgatcaggccgtgaagcatatc
gccgagaagcgggcaaaaggcgcaaaggtcatcgtgtccggctggacggagggctcgctc
gaccggctgcttcaggttctggccgagcatggtctcgccaatatccgtccggtcaaggcg
ctctcggatatcggttcgctcaagccgggggaggccgcatccgcggttctcagcctcgaa
gcgggattcgagaccggcgacctcgtcgtcatcggcgagcaggacattctcggcgaccgt
ctggttcgccgctccaagcggcgcaagcgcggcgcggatttcatcgccgaagtgaccggc
ctcgacgagggcagttatgtcgtacacgccgagcacggtatcgggcgcttcgtcggcctc
aggacgatcgaggccgccggcgcaccgcatgactgcctcgagctcgtctatgcggacgat
gccaagctgttcctgccggtggaaaatatcgagcttctgtcgcgctacggctcggaagga
accgatgctgtcctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggccaagctc
aagaaacggctgctcgacatggccggcggcctcatccgcatcgctgccgaaagacatacg
cgccatgcgccggtccttgcggcgcaggacggggtctatgacgagttcgccgcccgcttc
ccctatgacgagaccgaggaccaattgaactcgatcgatgccgtccgcgacgatctcggc
cgcggccggcccatggaccgcctcgtgtgcggcgatgtcggcttcggcaagacagaggtg
gcgctgcgtgccgccttcatcgcggcgatgaacggcgtgcaggtcgccgtggtggtgccg
acgaccctgcttgcgaggcagcacttcaagaccttctccgatcgtttccgcggcttgccg
atacggatacagcaggcctcacggctggtcggctcgaaggatctggcgctcacgaagaaa
gaggtcgccgaaggcaagacggacatcgtagtgggcacgcacgcgctgctcggctcgtcg
atcaaattcgccaatctcggcctgctcatcatcgatgaggagcagcatttcggtgtcaag
cacaaggaacgcctgaaagagctgaagaccgatgtgcacgtcctcacgctctcggcgacg
cccattccgcggacgctgcagcttgccctcaccggagtgcgcgaattgtcgctgatcacg
acgccgccggtcgaccgcatggcggtgcgaaccttcatttcgcccttcgatgctttggtg
atccgagagacgctgatgcgcgagcactaccgcggcggccagagcttctatgtctgtccg
cgcgtgagcgatcttccggaaatccacgatttcctgaaatccgacgtgccggaactgaag
gttgccgtggcgcacgggcaaatgccggcgaccgagctcgaagatatcatgaacgccttc
tacgaggggcgctacgatgtgctcctctcgacgacgatcgtagagtccggtctcgacgtg
ccgaccgccaacaccctgatcgtgcatcgtgccgatatgttcggcctcgcccagctctat
cagctgcgcggtcgggtagggcgctccaaggtccgcgccttcgcgctcttcacccttccc
gtcaacaagacgttgaccgggccggcggaacggcgcctcaaggttctccagtcgcttgat
acgcttggagccgggttccagctcgccagccacgacctcgacatccgcggagcgggcaac
ctgctcggcgaggagcagtccggtcacatcaaggaggtcggcttcgagctctaccagcag
atgctggaggaggcggtcgccgagctcaagggcgaagaggagatccacgataccggctgg
tcgccgcagatatcggtcggaacgccggtgatgatccccgaagagtatgtgccggacctc
aatctgcggctcggcctttatcggcgcctgggtgaactgaccgacctcaaggagatcgac
ggcttcggtgcggagctgatcgaccgtttcgggccgctgccgacggaggtgcagcacctc
ctgaaaatcgtctacgtcaagtcgctctgccgcacggcgaatgtcgaaaagctcgatgcg
gggccgaagggcgtcgtggtccagttccgcaacaaggaatttcccaatcccgccgcgctc
gtgggctacatcgcgaaacagggaacagtcgccaagatccgcccggaccagagcattttc
ttccagcgcgagctcgcaactccggaaaaacgcctttccggcgccgcgatggtgatgacg
cagcttgcagcgctcgcaaaggccggttga
DBGET
integrated database retrieval system
