Sinorhizobium meliloti AK83: Sinme_1817
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Entry
Sinme_1817 CDS
T01521
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk02020
Two-component system
smk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sinme_1817
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sinme_1817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smk03021
]
Sinme_1817
Transcription machinery [BR:
smk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sinme_1817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
HTH_3
LacI
Motif
Other DBs
NCBI-ProteinID:
AEG53546
LinkDB
All DBs
Position
1:1833220..1834746
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AA seq
508 aa
AA seq
DB search
MASSFSLQLKQSQSLAMSPQLMELMRLIAMNHLELSHFIAQEVEENPLLEVQSADEAAAA
DHEDASPHSAEAGSEIDDGLVDSALLRDGERLSDGLDADFANVFPDDTAPQRADAPELLD
QWKSMPGAGNGEDYDLDDFVAYRNTPRETLSEQIPFALGAASDRRIAQHLIDQLDDTGYL
HGDLAETAARLGVAVEDMDRVLHVLQQFDPPGIFARTLGECLAIQLRARNRFDPAMEALV
ANLELLARRDFASLKKICGVDEEDLIDMHAEIRRLDPKPGTSFEIGVFEGITPDVVVRAA
PDGGWSAELSSDDLPRVRVKHDYFAELSRSCGKNSDQDYFKERLERANWLERSLDDRART
IRKVADEIVRQQQAFLAHGLGHLRPLILKTVADAIDMSQSTVSRVTSNKYMQTPRGVFEL
KYFFTASIGSADDGDAHSAESARHRIRTMINQESAEAVLSDDAIVDRLKKEGVKIARRTV
AKYREAMNIPSSFPRRREKRALAKAKRL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttccttcagccttcagttaaaacagtcgcagtcgctggctatgtcgccgcag
ctgatggagttgatgcggctgattgcgatgaaccatctggagctcagccatttcatcgcg
caggaagtcgaggagaacccgctgctggaggtccagtcggccgatgaggcagccgcagcg
gaccacgaggatgcgagcccgcattcggcggaggccggcagcgaaatcgacgatgggttg
gtcgacagcgccctgttgagggacggcgaaaggctcagcgacggactggacgccgatttt
gccaacgtcttccccgatgatacggcgccgcagcgggcggatgcgcccgagctcctcgac
caatggaaatccatgccgggtgccggaaatggcgaggattacgatctcgacgatttcgtt
gcctaccgcaatacaccgagggagacgctcagcgagcaaattcccttcgcgcttggtgct
gcctccgatcggcggatcgcccagcatctgatagaccagctcgacgacaccggctatctc
cacggcgacctcgccgagaccgccgctcgactgggtgtggcggtcgaggacatggaccgt
gtgctccatgtgctgcagcagttcgatccgccgggcatcttcgcgcgcacgcttggcgaa
tgtcttgccattcagctgcgcgcccgcaaccgtttcgatccggcgatggaagcgctcgtg
gccaatctcgagctcctggcacggcgcgatttcgcaagcctcaagaagatctgcggcgtc
gacgaggaagatctcatcgacatgcacgccgagatccgcaggctcgacccgaaacccggc
actagcttcgaaatcggtgtgttcgagggcattactcccgatgttgtggtgcgcgccgcg
cctgatggcggctggtccgcggagctcagttccgacgacctgccgcgggttcgcgtcaag
cacgactatttcgcagagctatcccgctcctgcggaaagaacagcgaccaggactacttt
aaagaacgcctggaacgtgccaactggctggagcgcagcctcgatgatcgcgccaggacg
attaggaaggtggcagacgagatcgttcgtcagcagcaggccttcctcgcccacggcctc
ggccacctgcggccgctgatcctcaagaccgtggcggatgcgattgacatgagccaatcg
acggtgagccgggtcacctccaacaaatacatgcagaccccgcgcggggtgttcgagttg
aaatatttcttcacggcctcgatcggttcggccgacgacggcgatgcccattcggccgag
tccgcacgccatcgcatccgcacaatgatcaatcaggaaagcgccgaggccgtgctttcg
gatgacgcgatcgtcgaccgcctcaagaaagaaggcgtaaaaatcgccaggcgcacggtc
gcaaaatatcgcgaagcgatgaacatcccatcctctttcccgcgccgccgcgagaagcgt
gcactggcgaaggccaagcggctctaa
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