Sinorhizobium meliloti AK83: Sinme_2363
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Entry
Sinme_2363 CDS
T01521
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sinme_2363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smk03019
]
Sinme_2363
03400 DNA repair and recombination proteins [BR:
smk03400
]
Sinme_2363
Enzymes [BR:
smk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sinme_2363
Messenger RNA biogenesis [BR:
smk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sinme_2363
DNA repair and recombination proteins [BR:
smk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sinme_2363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEG54080
LinkDB
All DBs
Position
1:complement(2364942..2366798)
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AA seq
618 aa
AA seq
DB search
MPESHNTGRLFETEGVSNPLDLLKRIYGYSTFRGQQQAVVDHVVAGGDAVVLFPTGAGKS
LCFQIPALCRRGVGIVVSPLIALMRDQVEALKQLGIRAAALNSSLTRDEAIAVRRALSRD
ELDLLYVTPERAVTDGFAEMIADADIALFAIDEAHCVSQWGHDFRPEYRGLGCLAERFPG
VPRIALTATADPHTRDDMIERLGLGGARVFASSFDRPNIAYEIVERDQPRQQLLRFLSRF
KDASGIVYCLSRAKVEDTAEWLDAQGIRALPYHAGMERAARDAHQDAFLKEENLCLVATV
AFGMGIDKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRRRMIDE
GGAPEEIKRIERAKLNSLLAICETAGCRRQAILAHFGEAHPGGCGHCDTCLKPVETWDGT
EAAIKALAAVYRTGERFGTGHLIDVLTGSVNEKTERFGHVDMPVFGAGKDLPARTWQSIF
RQLLAAGLISVDHAAFGALKLEPEARSVFRRERQVLFRKDRPSSGKAKTARGSKPASERS
DLAGSDLELFERLRSERLSLAREMDVPPYVVFPDTTLIALAKRRPRDFEELLDVPGIGES
KRERYGEAFLAVIEAFEG
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaagccacaacaccggccgcctgttcgaaacggaaggcgtcagcaatcccctc
gatctcctgaagcgtatctacggttattccaccttccgcggccagcagcaggcggtcgtc
gaccatgtggttgccggtggcgatgccgtcgtgctctttccgacgggggcgggaaaatcg
ctctgcttccagatcccggcgctctgccgccggggcgtcggcatcgtcgtttcgccgctg
atcgccctgatgcgcgatcaggtggaagcgctgaagcagctcggcatccgggccgcggca
ctcaactcttcattgacgcgggacgaggcgattgcggtccgccgcgcactttcgagagac
gaactcgatctcctctacgtgacgccggagcgcgccgtcaccgatggcttcgccgaaatg
atcgccgatgccgatatcgcccttttcgcgatcgacgaggcccattgcgtatcgcaatgg
ggacatgacttccgcccggaatatcgcggcctcggctgcctcgccgagcgctttcccggt
gtgccgcggatcgcgcttaccgccaccgcggatccccacacgcgcgacgatatgatcgag
cggctgggactcggcggggcgcgcgttttcgcctccagcttcgaccgcccgaatatcgcc
tatgagatcgtggaacgcgatcagcctcgccagcaattgctgcgcttcctgtcgcgcttc
aaggatgcaagcggcatcgtctattgcctgtcgcgcgcgaaggtcgaggacacggcggaa
tggctcgatgcacagggcatccgtgcgcttccctatcatgccggcatggagcgggcggcg
cgcgacgcgcatcaggatgcattcctcaaggaggaaaacctgtgcctcgtcgcaaccgtc
gctttcggcatgggaatcgacaagccggatgtgcgctacgtcgcccatctcgatctcccg
ggctcggtcgaggcctactaccaggagacggggagggcgggtcgcgatggtctgccttct
gaagtgtggatggcctatggcatggcggatgtcatccagcgccggcggatgatcgacgag
ggcggagcgcccgaggaaatcaaacgcatcgagcgggcgaaactcaattcgctgcttgcc
atttgcgagacggcaggctgccggcgccaggccatcctcgcgcatttcggggaggctcat
ccgggcggctgcggtcattgcgacacctgcctgaagccggtcgagacctgggacggcacg
gaagcggcgatcaaggcccttgccgccgtctaccgcaccggagagcgcttcggaaccggc
catctgatcgatgtgcttaccggcagcgtcaacgagaagacggagcgcttcggccatgtc
gacatgccggtcttcggggccggcaaggacctgccggcgcgcacctggcagtcgatcttc
cggcaattgctcgccgcagggctgatctccgtggaccacgccgccttcggagcgttgaag
ctcgagcctgaggcccgcagcgtctttcgccgcgaacggcaggtgctcttccgcaaggac
cgtccgagttccggcaaggccaaaaccgcacgcgggtcgaagccggccagcgaacgatcg
gacctcgcgggatccgatctcgaactgttcgagcggctccggtccgagcgcctgtctctc
gcccgcgagatggacgtgccgccttatgtcgtctttccggatacgaccctgattgcgctt
gccaaacggcgtccgcgcgatttcgaggagctgctcgacgttcccggcatcggcgagagc
aagcgggagagatatggcgaagcgtttctcgctgtgatcgaggcgttcgagggctaa
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