KEGG   Sinorhizobium meliloti AK83: Sinme_3330
Entry
Sinme_3330        CDS       T01521                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
smk  Sinorhizobium meliloti AK83
Pathway
smk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sinme_3330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smk03021]
    Sinme_3330
   03019 Messenger RNA biogenesis [BR:smk03019]
    Sinme_3330
Transcription machinery [BR:smk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sinme_3330
Messenger RNA biogenesis [BR:smk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sinme_3330
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: AEG55036
LinkDB
Position
1:complement(3422294..3423559)
AA seq 421 aa
MAEMKLQELKNKTPTDLLAFAEELEVENASTMRKQELMFAILKMLAQQEIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaagaacttaagaacaagacgccgaccgacctcctggccttt
gccgaagagctcgaggtggagaatgccagcacgatgcgcaagcaggagctgatgttcgcg
atcctcaaaatgctggctcagcaggaaatcgagatcatcggcgagggcgtcgtcgaggtc
cttcaggacggatttggcttcctgcgctcggccaatgcgaactatctcccgggtcctgac
gatatctatatttcgccttcgcagatccgccgcttctcgctgaagaccggcgacacggtc
gagggcccgatccgcgggccgaaggaaggcgaacgctatttcgcacttctgaaggtcaac
acgatcaacttcgacgatccggagaagatccgccacaaggttcacttcgacaacctgacg
ccgctctatccgaacgagcgcttcaagatggaactcgaggttcccacgtccaaggatctc
tcggcgcgagtcatcgatctggtcgcaccgctcggcaagggccagcgcggcctgatcgta
gcgccgccgcgcaccggtaagacggtgcttctccagaacatcgcgcattcgatcaccgcg
aaccatccggagtgttacctgatcgtcctcttgatcgacgagcggccggaggaagtcacg
gacatgcagcgctcggtcaagggcgaagtggtgtcctcgaccttcgacgagccggcaact
cgccacgtccaggtcgccgagatggtgatcgaaaaggccaagcgcctcgtggaacacgga
cgcgatgtggtgatcctgctcgactcggtcacccgtctcggccgtgcctacaacacggtc
gttccctcctcgggcaaggtactgaccggcggtgtcgacgcaaacgccctgcagcgtccg
aagcgcttcttcggcgctgcccgcaacatcgaggaaggcggctcgctgacgattatcgca
acggccctgatcgacaccggtagccgtatggacgaagtcatcttcgaagagttcaagggt
accggcaactccgaaatcgtccttgaccgcaaggtggccgacaagcgcatcttcccggct
atggacatcctgaagtccggcacgcgtaaggaggacctcctggtcccgcgtcaggacctg
cagaagatcttcgtgctgcgccgcattctcgcgccgatgggcacgaccgacgcgatcgag
ttcctcatcgacaagctgaagcagacgaaaaccaatggcgacttcttcgactcgatgaat
acgtaa

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