Stenotrophomonas maltophilia K279a: Smlt0053
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Entry
Smlt0053 CDS
T00718
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Smlt0053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sml03400
]
Smlt0053
Enzymes [BR:
sml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Smlt0053
DNA repair and recombination proteins [BR:
sml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Smlt0053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CAQ43668
UniProt:
B2FU16
LinkDB
All DBs
Position
56221..58707
Genome browser
AA seq
828 aa
AA seq
DB search
MSLHQYRRKRRLGGGAGQTTEPDDTPAPGDPKQRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVEVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRGDGEARDAEADDLLTAPMPK
RTPAAKKRSADKTARAAPVARTTTRKADVRWHARALQLHGARDAPYPHAFKPQLTDHRDS
APDGDRWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVQALPVRDARLDG
ELVVLDKEGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGADISRAPLLERKALLKELIG
PAPGTLAFSEHVIDHGPQVFDASGKAGFEGTVSKQVDAPYVNTRARSWVKVKHEDTDEFL
IVGYTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDQSLRALLKALQPLAVKTPVLQ
LPAHVPFRAASVRWVKPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADTET
GGEVEITHPERVVFPRQKLRKGDVADYYQRMARWILPEIAGRPLSLLRCPDGVGKACFFQ
KHHGPGLGDAVHAVPLQQKSGREDYVYVDDARGLLQLVQMNTLELHPWGATVADPEHPDR
LVFDLDPGEGVSWAQVKAAARDVRDRLQEVGLQSFVRLSGGKGVHVVVPLQPKAGWDEAK
AFCEAFAQAMALEQPDRYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARDAAGVAV
PLRWEELARVSAADAFPMAKALARAKRLKGDPWQGIARLKQRLPSLKR
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcaccagtatcggcgcaaacgccggcttggcggtggcgccgggcagacaacg
gagcccgacgacacgcccgcaccgggcgacccgaagcagcggccgacctttgtcatccag
ctgcaccatgccagctcgcgtcactatgacttccgcctggaaatggacggcgtactgaag
agctgggcggtgcccaaggggccttccctgcgcgtcggtgaaaagcggctggccgtggaa
gtggaagaccatccgctctcctacgccggtttcgagggagacattcctgaaggccactat
ggtgcgggccacgtggaagtcttcgatcacggcacctgggcctgtgaaggcgatccactg
caggcactggcggcgggcaagatcgacttcgtgctgcatggacaacgcctggccggtggc
tggaagctggtgcggaccgcgatgaaaggacgccaggtgcagtggctgttgatcaagcgc
ggtgacggggaagcgcgcgacgcggaggcggatgacctgctgacggcaccgatgccgaaa
cgaacacctgcggcgaagaagcgttccgcggacaagacggcgcgagctgcacccgtcgca
cgcacgaccacacgcaaggccgatgtgcgctggcatgcacgcgcgctgcaactgcacggc
gcacgtgacgcaccctacccgcatgcattcaaaccgcagttgaccgatcatcgcgacagt
gcgccggacggcgaccgctggcttcacgagatcaagtgggatggctatcgcctgctggct
gatctgcacgatggcgaggtcaagctgcgctcccgcaatggtctggattggaccgatgat
tttcccgaagtggtgcaggccgtgcaggcgctgccggtgcgcgatgcacgcctggacggc
gaactggtggtgctggacaaggaaggacgcagtgacttcgcagcgttgcagcgggtgatc
gacggcagttcgaagcaaccgctgcgctacatcgtgttcgatcttccgggcgtggctgga
gcggatatcagtcgtgcgccgttgctggagcgcaaagcactcctgaaagagctcattggg
cccgcgcctggcaccctggccttcagtgagcacgtgatcgaccatggcccgcaggtgttc
gatgccagtggcaaggccggattcgaaggcaccgtcagcaagcaggtggatgccccgtac
gtgaatacccgcgcgcgcagctgggtgaaggtgaagcacgaagacaccgacgagttcctg
atcgtcggctacacggcacccaagggttcacgggtggggttcggctcgctgctgctggcg
acgccggacaagggcggcttgcgctatgtgggccgcgttggcaccggtttcgacgaccaa
agcctgcgcgcgctgctcaaggcactgcagccattggcggtgaagacgcccgtgctgcag
ctgccggcgcatgtgccgttccgcgctgccagcgtacgctgggtgaagccggtggcggtg
gccgaggtggccttccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaag
cgactgcgcagcgacaagcagaaggaggacctgggaatgagcaccgcagataccgagacc
ggaggcgaggtcgagatcactcatccggagcgggtggtgtttccaaggcagaaactgcgc
aagggtgacgtggccgactactaccagcgcatggcgcgctggatcctgcccgagattgcc
ggacgtccgctgtcactgctgcgctgcccggacggcgtgggcaaggcctgcttcttccag
aagcaccatggccccggtctgggggacgcggtacatgcggtacccctgcagcagaagagc
ggccgcgaggattacgtctacgtcgacgatgcgcggggcctgctgcagctggtgcagatg
aacaccctggaactgcatccgtggggcgcgaccgtggccgatcccgagcacccggatcgt
ctagtgttcgatctcgaccccggcgaaggggtgagctgggcacaggtgaaggccgctgcg
cgcgatgtccgtgaccgcctgcaggaggtgggcctgcagagcttcgtgcggctgtccggt
ggcaagggcgtgcacgtggtggtgccgctgcagcccaaggctggctgggacgaggccaag
gcgttctgcgaggcgttcgcgcaggcaatggcgctggagcagcctgatcgctacgtggcg
acgatgagcaaggccaagcgcggcggcgtgatcttcatcgattggctgcgcaacacacgc
ggtgccaccagcgtgtgttcgtggtcgctgcgcgcgcgcgatgctgccggcgtggcggtg
ccgctgcgctgggaagaactggcccgggtgagcgcggccgacgcgtttccgatggccaag
gcgctggcgcgcgccaagcggctgaagggtgacccatggcagggcatcgcgcggttgaag
cagaggctgccgtcgctgaagcggtag
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