Stenotrophomonas maltophilia K279a: Smlt1433
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Entry
Smlt1433 CDS
T00718
Symbol
mfd
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Smlt1433 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sml03400
]
Smlt1433 (mfd)
Enzymes [BR:
sml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smlt1433 (mfd)
DNA repair and recombination proteins [BR:
sml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Smlt1433 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
LcrG
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAQ44972
UniProt:
B2FHH9
LinkDB
All DBs
Position
complement(1482141..1485605)
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AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASSTALAWYLAQAERAHDAPLLVIARDNHGANQLEA
DLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPTLKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPDGSLPVVCTGAYEASVA
FWAQTADRYEQRRHDVERPLLPPSALYLSPQLLRERLNDAPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgtcgaccgccctggcctggtacctggcccaggccgagcgtgcg
catgacgccccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcagaccctgcttggcggtgacccggccctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatctcgcagcgcctgtcc
gccctgcaccgcctgcccacgctgaagcgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctatgtgatcggtggcagcttcgacctgaaggtcggc
cagcgcctggacctggaagccgagaagcgtcgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccaggtgacttcgcggtgcgcggcggcctgctcgacgtgttcccg
atgggcgccgacgagccgctgcgggtagaactactggacgaggacatcgactcgatccgt
gccttcgatccggaaagccagcgttcgctggacaaggtcgaggcggtgcacatgctgcct
ggccgcgaagtgccgatggacgaggccagcatcgcacgcgtgctggccacgctgcgcgag
cgtttcgatgtggatacccggcgcagttcgctgtaccaggatctgaagtccgggctggcc
ccggccggcgtcgagtactacctgccgctgttcttcgaacgtaccgcgaccctgttcgac
tacctgcccgacggcagcctgccggtggtctgtaccggtgcgtatgaagcgtccgtcgcg
ttctgggcgcagaccgcggaccgctatgagcagcgccgccatgatgtggagcgcccgctg
ctgccgccttcggcgttgtacctgtcgccgcagctgctgcgcgagcgcttgaacgatgcc
ccgcgcatcgaggtgtggtcggctgaccacgcgcgcatcgccgatgcccatgcgctgggt
gaccagccgctgccgccgctgccggtggccgcgcgcgaggcccccgctggcgacgcgctg
aaatccttcctcggccactatccgggccgggtactgatcgccgccgattcgcccgggcgt
cgcgaggccctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccagcttcctcgccgacgatgcgcgcttcgcgatcgcggtggcaccgctggaagat
ggcttcgcactggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgagccggaagcgatcatccgc
gacctcggcgaactgaccgagggtgcaccgatcgtgcacgaggaccatggtgtcggccgc
taccgtggcctgatcgcgatggacgtcggcggcatgcccggcgagttcctcgaaatcgaa
tacgccaagggcgaccgcctgtatgtgccggtcgcccagctgcacctgatcagccgctac
tccggcgcttcagcggaaaccgcgccgctgcattcgctcggtggcgagcagtggagcaag
gccaagcgcaaggccgccgaaaaggttcgcgacgtcgctgccgaactgctggagatccag
gcccgtcgccaggcgcgtgccggcctggcactgcaggtggaccgtgcgatgtacgagccg
ttcgcagccggattcccgttcgaggaaacccccgatcagctggccgccatcgacgccacc
ctgcgcgacctcgccagcagccagccgatggaccgtgtggtctgcggcgacgtcggtttc
ggcaagaccgaggtggcggtgcgtgcggcattcgccgccgccagtgccggcaagcaggtg
gccgtgctggtgccgactacgctgctggccgaacagcattaccgcaacttccgcgaccgc
ttcgccgattacccgctgaaggtcgaggtgctgtcgcgcttcaagagcaccaaggagatc
aaggccgagctggaaaaggtcgctgccggcaccatcgacgtcatcgtcggcacccatcgc
ctgctgcagcccgacgtgaagttcaaggacctgggcatggtcatcgtcgacgaagagcag
cgtttcggcgtgcgccagaaggaagccctgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccacgccgatcccgcgcaccttgaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctggcacgtggcggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaagcgcgcatcggcatcgcccacgggcagatgcccgagcgcgagctggaaaag
gtgatgttggacttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttcggc
ctggcccagctgcaccagctgcgtgggcgcgtgggccgttcgcaccaccgtgcctacgcc
tacctgatcacccccgaccgccgcgcgatcacccccgacgctgagaagcgcctggaagcg
atcgcctcgatggacgagttgggcgccggcttcaccctggccacgcacgatctggagatc
cgcggtgccggcgaactgctcggcgaggaccagagcgggcagatggccgaggtcggcttc
agcctgtacaccgagcttctggagcgcgcggtacgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtgcgtggtgccgaggtcgagctgcatgtgccggcactg
atcccggaagactacctgccggacgtgcatacccgcctgaccctgtacaagcgtatttcc
agcgcgcgcgacagcgatgcgctgcgcgaactgcaggtggagatgatcgatcgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaggccaat
acgctgggcatccgcaagctggacctgggcgaaaacggtggccgcatcgtgtttgagtcc
aagccgaacatcgatccgatggcggtgatccagctgatccagaaacagccaaacctctat
gccatggaagggcccgacaagcttcgcatcaagcatccgctgccgttgccggaggaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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