Stenotrophomonas maltophilia K279a: Smlt3385
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Entry
Smlt3385 CDS
T00718
Symbol
pnp
Name
(GenBank) putative polyribonucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smlt3385 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sml03019
]
Smlt3385 (pnp)
03016 Transfer RNA biogenesis [BR:
sml03016
]
Smlt3385 (pnp)
Enzymes [BR:
sml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Smlt3385 (pnp)
Messenger RNA biogenesis [BR:
sml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Smlt3385 (pnp)
Transfer RNA biogenesis [BR:
sml03016
]
Prokaryotic type
tRNA degradation factors
Smlt3385 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_PNO1_2nd
DUF7680
S1_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
CAQ46813
UniProt:
B2FN86
LinkDB
All DBs
Position
complement(3422864..3424972)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLN
PDVDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAG
TSNAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDA
LISALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFETLAGRVAAEGWNPAELSKEFGE
LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGDAASAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgagaccggc
gaagttgcccgtcaggccagcggcgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggccaggacttcttcccgctgaccgtc
gattatcaggaaaagttctacgccggcggccgtatcccgggtggtttcttcaagcgtgaa
ggccgtgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgtccgatccgtccg
ctgttcccggaagactacaagaacgatgtgcagatcatcgccacggtcatgtcgttgaac
ccggacgtggacggcgacatcccggccctgatcggtgcctcggctgccctggccctggcc
ggcaccccgttcatgggtccgatcggcgctgccaaggtcggttacaagaacggcgagtac
atcctgaacccgaccgtcagcgaactggctgactcgcagctggaactggtcgtcgccggt
acctccaacgccgtgctgatggttgaatccgaagccgcgctgctgtccgaagaagtgatg
ctgggcgctgtgaccttcggtcaccgcgaaatgcagaaggtcatcaacgcgatcaacgag
ctgaccgtcgaagccggcaccaagccgtcgacctgggaagccccggccaagaacgacgcg
ctgatctccgccctgaaggaagccatcggcccgcgcctgggcgaagccttccaggtgcgt
gacaagctgcagcgccgtgacgccatctcggcaatcaagaaggacgtgttcgaaaccctg
gctggccgcgtggccgccgaaggctggaacccggccgagctgtcgaaggaattcggcgag
ctggaataccgcaccatgcgtgactcggtgctggacaccaaggtccgtatcgacggccgt
gcgctggacaccgtccgcccgatcgccgtgaagaccggcgtgctgccgcgtacccacggt
tcctcgctgttcacccgtggcgaaacccaggccatcgtgaccatcaccctgggcaccgcc
cgtgacggtcaggtcatcgacgccgttgccggtgagtacaaggaaaacttcctgttccac
tacaacttccccccgttctcggtgggtgagtgcggccgcatgatgggcccgaagcgccgc
gaaatcggccacggtcgcctggccaagcgcggcgtgctggctgtcatgccgtcgctggaa
gccttcccgtacaccatccgcgtcgtctcggaaatcaccgagtcgaacggttcctcgtcg
atggcctcggtctgcggctcgtcgctggccctgatggacgccggcgtgccggtgaaggct
ccggtggccggtatcgccatgggcctggtcaaggaaggcgagcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtcgccggtaccgct
gagggcatttccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggccctgcagcaggcgaaggctggccgtctgcacatcctgggcgaaatggcccac
ggcctgaccgctccgcgtgaagagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggttcgaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcttcg
gtcaacgccatcgctgcgcaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gaaccgggccgcatctatgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggtctggtccacgtgtcgcagatctccagcgatcgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtggaagaaggcgacgccgccagc
gccgaataa
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