Schistosoma mansoni: Smp_002190
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Entry
Smp_002190 CDS
T01095
Name
(RefSeq) putative pre-mRNA cleavage factor im, 25kD subunit
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
smm
Schistosoma mansoni
Pathway
smm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Smp_002190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_002190
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
Smp_002190
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
8343890
NCBI-ProteinID:
XP_018652968
LinkDB
All DBs
Position
6:<3400717..3404328
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AA seq
208 aa
AA seq
DB search
MCLSEGIMCSIPPYLQFVFRYPLKSYSFGTKEPNYERDRSVPARFQRLQEDFEKYGMRRS
VEGILLVHEHNLPHVLLLQLGTFFKLPGGELHPGEEEIEGLKRLLSEMLGRTDGIPVDWI
PEDCIGNWWRPNFEPPRYPYIPAHVTKPKEQTRLFLIQLPEKTLFAVPSNYKLVAAPLFE
LFDNARAYGPIISSLPQVLSRFNFAYND
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgtcagaagggataatgtgcagcatccctccttatctccaattcgtattcaga
tatcctttgaaaagttatagttttggcaccaaagaacccaattatgaacgagatcggagt
gttcctgctcgatttcaacggttacaggaggattttgagaagtatggtatgcgtcgatca
gttgaaggcatcttacttgtacatgagcacaacctacctcatgtcctcttacttcaactc
gggacgtttttcaaactccctggaggtgaattgcatccaggtgaagaagaaattgaagga
ctaaagcgattattatctgagatgttaggtcggacggatggcatcccagttgactggatt
ccagaagactgtatcggtaattggtggcgaccgaatttcgaaccacctcgctacccatac
attcctgctcatgtaactaaacctaaagaacaaacacgtttatttctaattcaacttcct
gagaaaacattgtttgctgtaccatcgaattacaaattagtcgcagctccgttattcgaa
ctttttgacaatgctcgagcttatggtccaattatttcttccttacctcaagtattaagt
cgcttcaactttgcatacaacgattga
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