Schistosoma mansoni: Smp_002550.1
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Entry
Smp_002550.1 CDS
T01095
Name
(RefSeq) putative serine/arginine rich splicing factor
KO
K12876
RNA-binding protein 8A
Organism
smm
Schistosoma mansoni
Pathway
smm03013
Nucleocytoplasmic transport
smm03015
mRNA surveillance pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_002550.1
09122 Translation
03013 Nucleocytoplasmic transport
Smp_002550.1
03015 mRNA surveillance pathway
Smp_002550.1
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_002550.1
03041 Spliceosome [BR:
smm03041
]
Smp_002550.1
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Smp_002550.1
Spliceosome [BR:
smm03041
]
Complex C
Other components
EJC/TREX
Smp_002550.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
8342438
NCBI-ProteinID:
XP_018651172
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All DBs
Position
3:15186618..15188807
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AA seq
177 aa
AA seq
DB search
MADVLDLHGENDFEEDADGDHGLMKLKESAKKRKGRGFGADSVGTTKEGYESLVVDDGSS
KSGPQRSVEGWILFVRNVQEEATEEDIRDKFCEYGDIKNIHLNLDRRTGYLKGYALVEYE
NFKEAFTAMEHLNGSELNGQRILVDWAFTKGPNPIKMSTKHRTRERSRSRSVDRARR
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtattggatttacatggagagaatgactttgaagaagatgcagatggcgat
catggtttaatgaaattgaaggaaagtgcaaaaaaaagaaaaggcagaggattcggagct
gactcagtcggaacgacaaaagaagggtatgaatctctagtagtagatgacggttcgtca
aaatcaggacctcaaagatccgtagaaggttggatcttgtttgtaaggaatgtacaggaa
gaagctacggaagaagacattcgagataaattctgtgaatacggcgatatcaaaaatata
caccttaaccttgatcggcgaactggttatttaaaaggatatgcattagtagaatatgaa
aatttcaaggaagcatttactgctatggaacatctaaatggttctgagctaaatggtcaa
agaattcttgtagattgggcgtttacgaaaggtccaaatccaatcaagatgtcaaccaaa
cacagaacacgtgaacgtagtagaagtcggtcagttgaccgtgctcgacgataa
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