Schistosoma mansoni: Smp_003660
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Entry
Smp_003660 CDS
T01095
Name
(RefSeq) putative dead box ATP-dependent RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
smm
Schistosoma mansoni
Pathway
smm03013
Nucleocytoplasmic transport
smm03015
mRNA surveillance pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_003660
09122 Translation
03013 Nucleocytoplasmic transport
Smp_003660
03015 mRNA surveillance pathway
Smp_003660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_003660
03041 Spliceosome [BR:
smm03041
]
Smp_003660
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Smp_003660
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Smp_003660
Spliceosome [BR:
smm03041
]
Complex C
Other components
EJC/TREX
Smp_003660
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Smp_003660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
GerA
UvrD-helicase
P-loop_SecA
DUF8110
Motif
Other DBs
NCBI-GeneID:
8342106
NCBI-ProteinID:
XP_018647655
UniProt:
G4V6L7
LinkDB
All DBs
Position
1:complement(7029930..7032906)
Genome browser
AA seq
426 aa
AA seq
DB search
MADEAELLDYEDEEQETVQEARPNGEATAKKGVKGAYVTIHSSGFRDFILKPELLRAIVD
CGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGEANTTVLVLCH
TRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIVVGTPGRILDLVR
SKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVMMFSATMSKEIRPVCRN
FMQDPLEIFIENDSKLTLHGLRQHYVKVKENEKNRKLFELLDELQFNQVIIFVKSVQRCM
ALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFISDEVDAKVLNEVQNRFEVNISELPDVMEIS
SYMEDR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaagctgagcttttggattatgaagatgaagaacaagaaacagttcaagag
gcaagacctaatggagaagccacagcaaagaaaggtgtcaaaggggcatacgtcaccata
cacagttcagggtttcgtgatttcatcctcaagccggaattattaagagccatcgttgat
tgtggcttcgaacatccatctgaagttcaacatgaatgtatacctcaagccattttaagc
atggacgtactgtgccaagcaaagtctggaatgggcaagactgcagtgttcgtcatagct
acactacaacagctcgatcccgaaggagaagccaatacaactgtcctagtcctctgtcac
acaagagaacttgccttccaaataagtaaagaatacgaacggttctctaaatacatgcca
aagataaaggtgggtgtgttttttggagggatgccaatacgtaaggatattgaaacgcta
acaaaatctcccgtccacatcgttgtgggaactcctggtcgtattctggatttagtgagg
agcaaaacattgaaactacaacatgtcaaacacttcattattgatgaatgtgataaaatg
ctggatacgctcgatatgcggcgtgatgttcaagaaatattccgcatgactccacatcaa
aaacaagtcatgatgttcagcgcaaccatgagcaaagaaattcgtcctgtttgcagaaac
ttcatgcaagacccgttggaaatatttatcgaaaatgactcaaagttgactttgcatggt
ctacggcagcattatgttaaggtcaaggaaaacgagaaaaacagaaagctctttgagctt
cttgatgaactgcagttcaaccaggttataatcttcgtcaagtccgttcaacgatgtatg
gctttggctcagttgctggtcgaccaaaacttccctgcaattgcaatgcaccgtaatatg
gctcaggaagaacgtttggaacgctaccaagcatttaagaatttccagaaacgtctactg
gtggctaccaatctctttggtcgaggtatggatattgaacgtgtcaacatcgtcttcaac
tatgatatgccagaagattccgatacctacctgcacagagttgcccgagctggtcgcttt
ggaactaaagggttagccataaccttcatatcagatgaagtcgacgcgaaggtcctcaat
gaagtacaaaaccgttttgaagtcaatatcagcgagcttcctgacgtcatggaaatatcc
agctacatggaagaccgataa
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