Schistosoma mansoni: Smp_004020
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Entry
Smp_004020 CDS
T01095
Name
(RefSeq) putative chromosome transmission fidelity factor
KO
K10754
replication factor C subunit 1
Organism
smm
Schistosoma mansoni
Pathway
smm03030
DNA replication
smm03410
Base excision repair
smm03420
Nucleotide excision repair
smm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smp_004020
03410 Base excision repair
Smp_004020
03420 Nucleotide excision repair
Smp_004020
03430 Mismatch repair
Smp_004020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smm03032
]
Smp_004020
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_004020
DNA replication proteins [BR:
smm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Smp_004020
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Smp_004020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MYG1_exonuc
RFC1
BRCT
AAA
BRCT_2
nSTAND3
RCF1-5-like_lid
AAA_22
PTCB-BRCT
RNA_helicase
Rad17
AAA_30
TIP49
RuvB_N
DUF2927
AAA_16
AAA_11
Motif
Other DBs
NCBI-GeneID:
8342145
NCBI-ProteinID:
XP_018647620
LinkDB
All DBs
Position
1:complement(5759723..5794365)
Genome browser
AA seq
1386 aa
AA seq
DB search
MKRRVVFSESDSDDEIKTKEKPKVKQNTKRYSEKKRKCTDVDDNQISCRNNSQQSIIDAL
KRQQELSKISRDKKANTIEAYFSQSVKPKKNVVSVDDFFGSSEKKPNAKPCAVANTPPHS
PMEIIPDTPVLSPKTPLGIRGSHGSSPQTNVIVLESVKTTSNQTSSMANESLNDSIEIAV
KDRKHFWAYKARDGPRSLGSREIPKGTPDCLKGLNFLITGILECIEREDAANLIQNCGGK
VLKTLGKKTDYLVVGREPGAAKIEKANNLKIKQITEEYLFEMIEKSSNVPLVHHKSNVSN
SESSKKLEPVDVNDCKQKLKSPKKSPKKKQYTESPDNALKSHKHESPNKCARKSVTSLCN
ELPLTARPVLTNNSTFNSKTDRNHSSGLSKTPTNFIDKPDSLLKEMGSKLSELWVDKYKP
TSIRSLIGQNGAQSPANRLLNWLSSWHSDFSAGLKAKAYSSAPPWGPSSSDDGKWARAAL
LSGPPGIGKTSTAILVCKQLGYTYCEFNASDCRSKRCLSEEIGQSLGLRNLSHMAFGQAS
TLNSGHHVLIMDEVDGMAGNEDRGGMQELINMIKITQLPIICMCNDRQAIKIRSLANYCL
DLRFHRPRVEQIKSAVLSIACKENVNLPPDVLTNIIDSSNHDIRQVINNVQMWCSSGLID
SEGLKMDALGARKDLHLNAFDVIRKVFAPDISGSQGSVATFNESLDLFFQDYNLIPLFVE
ENYLNVRVHNTHDDKKILQLMSQAASDIATADIISSTIRSSRTGSWSLLPVQGVFSTVSP
GRTLRGSLPGGPGGVSFPCWFGKNSTQSRINRTTSELASHLRLATHCGSSNPLTLLLDYA
TPISELITRPLKEGDIDSAIQFLISYQITREDVDSIMELTTWPNRPNRMLSVDSKVKAAL
TRTYNKSSHLLPYVISSSGSFKRKRGGGGAPVSFEGENENDSGLFDDDEEEQEDEKVDLK
NDAMIVIKKEDQKKRIDTEKSKLQRGEQCSSSDSNNTKVRGRGRGRGRSRDSSKCLSIQQ
ASKIPCLFIFILSNNISLISMVANSRLRIGTHDGRFHADEILACAMLKHLPEYSNAEIIR
TRDSSILSTCDIVVDVGGVFNPENHLYDHHQREFNLTYKDFYPNSDWDIKLSSAGLIYVH
FGRKILSCILGIDENTMDPLVTALFDKMYSSFIVEIDAIDNGVPMATTPLRYSMNTSLSS
RVNRMNPAWNQLDTDETVCFHNALQLVDKEFTTLVHFYADTWYPAREIVLNAVKNRYSVD
SSGSIIYIEGTGCPWSTHFFEIEKSLLLNNKNINEIEKNDPLLFAIYQRKDSTWTIQAIP
LNEHNNFSQRLPLPESWRGLRDEQLSNIVGLPDCVFVHSTGFLGVHKTRDGVLQMARLTI
KMKENQ
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgacgggtggttttcagtgagtcagattcagatgatgaaattaagactaaggaa
aagccgaaagttaaacaaaatacgaaacgatattctgagaagaaaaggaaatgcacagac
gtcgatgataatcaaatatcttgccgtaataactcacagcagtcaataatagacgcctta
aaacgacagcaagagttatccaaaatctcccgtgacaagaaagcaaatactattgaagcg
tacttctcacagtctgtgaaacctaagaagaatgtagtttccgttgatgatttcttcgga
tcatctgagaagaaaccaaatgccaagccttgtgctgtcgccaacacaccacctcattca
ccgatggagatcatcccggatacgccagtattatctccgaaaacacctttggggatcaga
ggaagtcatgggagctcaccccaaaccaatgttattgtattggaaagcgtgaagacaact
agtaatcaaacgtcgtccatggctaatgaatctcttaatgatagcattgaaattgctgta
aaagatcgaaagcatttttgggcctacaaagctcgtgatggtcctcgcagtctcgggtca
agagaaattcctaagggaactccagattgtttaaagggactgaacttcctcatcacagga
atactagagtgcattgaacgagaggacgccgcaaatcttattcagaattgtggtggtaaa
gttttaaagacattaggtaaaaagactgattatcttgttgtcggacgtgaacctggtgca
gcgaaaattgagaaggctaacaatttgaaaattaagcagattactgaagaatatcttttt
gaaatgatagaaaaatccagtaatgttcctcttgtacatcataaatctaatgtatccaac
tcagaatcttccaagaaattggagcctgtagatgtaaatgattgtaaacaaaaattaaaa
agtcctaaaaaatctcctaagaagaagcaatatactgaatcaccggataatgctcttaaa
tctcataaacatgaatctccgaataaatgtgcaagaaaatctgttacgtctttatgtaat
gaacttcctcttactgcacgtcctgttttaaccaataattcaacatttaatagtaaaact
gatcgaaatcatagcagtggtttatccaaaactcctactaatttcattgataagccagat
tccctgttgaaggagatgggttcaaagttgtctgaattatgggttgataagtataaacca
acgtctattcgctcactgattggtcaaaacggtgcacaaagtccagctaatcgactttta
aattggctatcttcctggcactcggacttttcagcaggtttaaaagcgaaggcttactca
agtgcccctccatggggcccgtcatctagtgatgatgggaagtgggcgcgcgcagcactt
ctttcgggacctccagggattggcaaaacgtcaacagctattttagtatgcaaacaactc
ggttatacttattgtgaattcaatgcatccgattgtcgatccaagcggtgtttaagtgaa
gaaataggacagtctttgggtctacgaaatttgtcacacatggcttttggtcaagcatca
acattgaattctggtcatcacgttttaattatggatgaagtagatggtatggctggtaat
gaagatcgtggaggaatgcaagaacttattaatatgattaaaattactcaactacctatt
atatgtatgtgcaatgatcgtcaggcgataaaaatacgctctctggctaactattgtctc
gatttaagatttcatcgtccacgagttgaacaaattaaatcagcagtattgtctattgct
tgcaaagaaaatgtgaatttacctccggatgtattaacaaatattatcgattctagtaat
catgatattagacaggtaattaataatgttcaaatgtggtgtagttctggtttaattgat
tctgaaggattaaaaatggatgcattaggtgcacgtaaagatctacatttaaatgcattt
gatgtgattcgtaaagtttttgcaccagatatttctggttctcaaggcagtgttgctaca
ttcaatgaaagtttagatttattttttcaagattacaatttaattcctttgtttgttgag
gaaaattatctcaatgttagagttcataatacccatgacgataaaaaaattttgcaatta
atgtcccaagcagcgtctgacatcgctactgcagatatcatttcatctactatcagatca
tcacgtacaggatcatggtctttattacctgttcaaggtgtgttcagtacagtttcacct
ggtcgtactcttcgtggttctttacctggtggcccaggtggtgtttcatttccatgttgg
tttggtaagaacagtacacaaagccgtatcaatcgaactacttcggaattagcttcacat
ttacgattagcaactcattgcggttcatcaaatccgcttacattattactagattatgct
acaccaatttctgaacttatcactcgtccacttaaagaaggtgatattgacagtgctatt
caatttttaattagttatcaaataacaagagaagatgttgattctataatggaattaact
acttggccaaatcgaccaaatcgaatgcttagtgttgattcaaaagttaaagctgcatta
acacgtacgtataataaatcatcgcatttactaccgtatgttatctcatcaagtggttct
tttaaacgtaaacgtggtggtggtggtgctccagtttcatttgaaggggaaaatgaaaat
gattctggtctattcgatgatgatgaagaagaacaggaggatgagaaagttgacctgaag
aatgatgctatgattgtaattaagaaagaagatcaaaaaaagcgcatagacactgagaaa
tccaaattacaacgaggagagcaatgctcatcgtctgatagcaacaataccaaagtacgt
ggtcgaggtcgtggccgcggtcgcagtagagattcttcaaagtgcttatcaattcaacaa
gcttcaaaaattccctgcttatttattttcattctatctaacaatatttcgctaatatca
atggtagctaattcaagactgcgtattggtacacatgatggacgattccatgcagatgaa
atacttgcatgtgcaatgcttaaacatttaccggaatactcaaatgctgaaattatacgc
acaagagattcaagtattttgtcaacatgcgatatcgtcgttgatgttggtggtgtattc
aatcctgaaaatcatctatacgaccatcatcaaagagaattcaatcttacttataaagat
ttttatccaaattctgattgggatataaaattaagtagtgcaggtttgatatacgttcat
ttcggtcgaaaaatactaagttgtatacttggtatagatgaaaatactatggatccattg
gtgacggcactttttgataagatgtatagttcatttattgttgagatagacgctatcgat
aatggtgttccaatggcaacaacacctttaagatattctatgaatacatctttaagtagt
cgagtgaatcgtatgaatccagcctggaatcagttggatacagatgaaactgtttgtttt
cataatgcattacaattagtcgataaagagtttactacattagttcatttctatgctgat
acatggtatccagctcgtgagattgtattaaatgctgtcaaaaatcgttattcagttgat
tcatctggttcaataatttatattgaaggtactggatgtccttggagtacacatttcttt
gaaattgaaaaatctttattattaaataataaaaatataaatgaaattgaaaaaaatgat
ccacttttatttgctatttatcaacgtaaagatagtacatggactatacaagctatacca
ttaaatgaacataataatttttcacaaagacttcctttacctgaaagttggagaggttta
cgtgatgaacagttaagtaatattgttggactgcctgattgtgtatttgtacattctact
gggtttttaggtgtacataaaactcgcgacggtgttctacaaatggcaagattaactata
aaaatgaaagaaaatcagtaa
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integrated database retrieval system
