Schistosoma mansoni: Smp_011980
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Entry
Smp_011980 CDS
T01095
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
smm
Schistosoma mansoni
Pathway
smm03022
Basal transcription factors
smm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Smp_011980
09124 Replication and repair
03420 Nucleotide excision repair
Smp_011980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smm03021
]
Smp_011980
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_011980
Transcription machinery [BR:
smm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Smp_011980
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Smp_011980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
8341545
NCBI-ProteinID:
XP_018654356
LinkDB
All DBs
Position
W:complement(18558486..18565349)
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AA seq
643 aa
AA seq
DB search
MLKQKEDVLLMVKHVRYKKVDGTLYVNSGRVAWRNQTSDSFRISAKFEDIRIQRISPDQK
EKVQLQLLMHSGESFTFQFSDPGGREKQLEMRNNVKAMLQNLLPKFKDKAQAELKEKFRL
LESNPEILALYKELVVSGILSSEEFWARPEFSHNNFNSSQYDRPQVIGVPSCLLSDIKPE
ADGANGIKYNLTHETINAIFRAYPTVRDKHREMVPDKLSEADFWIKFFQSHYFHRDRVHL
PKNDIFADCAGIDDKLLLSDIRKSRVNRNNFHLDLPNLTDYDIGQGYGTDQIPGPTKQKS
ADSDQSADNTLNESVIPSNLSANQLLLRRFNNHSILVLKSLSSNDASSSTNNVSQNPKDV
LNSCPLKDRVYVKELVEDQNPAEIQLDLTCVTDYLEGPTPSIAGKATKLMDPLSVTRQTD
TSYGLQLEQSVKRCKNMMVAAYHMGKKPGVSLLTALESQQALADVSPGGCLIGGKLNERS
KPCDLNSDQSSLRLFEPGRNNRISNSPKVSDEHHANDDVNRGPPLLTPEQVKDLSLLYSS
AAELLRHFWACFPVTTPQLADKLDRVAASLTRFRTTKVIHFAAGVDPSLMTKSDTYSSDS
SEHLPNTGNSGPISYRSSVTSHLESMLDSAQKKYSEWKTRHSQ
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcagaaagaagatgtacttctcatggttaagcacgtacggtataagaaagtg
gatgggaccctgtatgttaattcaggaagagtggcttggcgtaaccaaacatctgatagt
tttcgtatcagtgcaaaattcgaagatattagaatacagcgtattagtccggaccaaaaa
gaaaaagttcagctccagttattaatgcatagtggggagtctttcacattccagttttcg
gatcctggaggcagagagaaacagcttgaaatgcgtaacaacgtgaaggcaatgttacaa
aatttgctacccaaatttaaagacaaggctcaagccgaattaaaggaaaaatttcgactc
cttgaatcaaaccctgagattctggccttatacaaagaattggttgttagtggtatactt
agctctgaagagttttgggctcggccagaattctctcataataattttaattcatcacag
tacgaccgacctcaagttattggagtcccaagttgtcttttgagcgatatcaagcctgaa
gcagatggtgccaatggaataaaatacaaccttactcacgagacaatcaatgcaatattc
cgagcctatcctactgtacgtgataaacatcgggaaatggtccctgataaattatctgaa
gctgacttctggataaagttttttcagtctcattattttcaccgtgaccgcgttcatctt
ccgaaaaatgatatatttgctgattgtgctggtattgacgacaaacttttactcagtgat
atacggaaatcaagagtcaaccggaataatttccatcttgatttacctaatcttaccgat
tacgatataggacaaggttatgggactgaccaaatacccggtccgacaaaacaaaaatca
gctgactcagatcagagtgcagataatacattgaatgaatcagtaatcccgagcaattta
tctgcaaatcagttgttacttcgtcgtttcaacaatcattcgatacttgttttgaaatct
cttagttcaaatgacgcatcttcatcaactaataatgtatctcaaaatccgaaagatgtg
cttaactcctgtccgttaaaagaccgcgtgtacgttaaagaactggtagaagatcaaaat
cctgcagaaatccagttagacctaacttgtgtaactgactatttagagggtcctacccct
agtatagctggtaaagctacaaagttaatggatccattatcagttacccggcaaacagat
acttcttatggattacaactagagcagtcagtaaagagatgtaagaatatgatggtagct
gcttatcacatggggaaaaagccaggtgtatcacttttaactgcacttgaatctcaacaa
gcattggcagatgtctcacctggtggttgcctcatcggtgggaaacttaatgaacgttcg
aaaccatgcgacttaaatagtgatcaatcatctttacgtttgtttgagccaggaagaaac
aatcgtatttcgaactctccgaaagtgtctgatgaacaccatgctaatgacgatgtcaat
cgtggcccgccactactcacaccagaacaggttaaagatttgtcacttttatattctagt
gccgctgaactcttaagacatttctgggcatgtttccctgtaacaaccccacagctagct
gataagttagatcgtgttgctgccagtcttactcgttttcgtacaaccaaggtgatccac
ttcgccgctggtgttgatccgtctttgatgactaagtcagacacatattcttctgattca
tccgaacatctacctaacacaggaaattctgggcctatttcttaccgttcaagtgtgact
agtcacctggaatcgatgctggactccgctcaaaagaagtattctgaatggaaaactcgg
cattcgcaataa
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