Schistosoma mansoni: Smp_013790
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Entry
Smp_013790 CDS
T01095
Name
(RefSeq) DEAD box ATP-dependent RNA helicase, putative
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_013790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_013790
03009 Ribosome biogenesis [BR:
smm03009
]
Smp_013790
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Smp_013790
Spliceosome [BR:
smm03041
]
Complex A
U1 snRNP components
U1 related factors
Smp_013790
Complex B
Smp_013790
Ribosome biogenesis [BR:
smm03009
]
Eukaryotic type
Pre-60S particles
Helicases
Smp_013790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
8345468
NCBI-ProteinID:
XP_018645270
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All DBs
Position
2
Genome browser
AA seq
769 aa
AA seq
DB search
MSRGVSRFHSSRSPVRSVSRWSSFSQNPKRGKLEMDMDFAAPDWKSAELPKFEKKFYQEH
PLSASRSEAEVEAFRKKYKMSLSGRDVPRPVLSFNELNVPDYILSVIAKNGWQLPTPIQS
QGWPMALSGRDVVGIAQTGSGKTASFLLPAVIHIMAQPRLLRNEGPICLILVPTRELAQQ
VLVVAKEFADAASLRAMCFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRV
TYLVLDEADRMLDMGFEPQIRKIIGHTRPDRQTLMWSATWPREVQTLAREFLTDYIQVNI
GSVSLHANPNITQIVEIMDDWSKEQRLIELLTSFGRARTLVFVETKRRTDQLTNSLRRRG
FYVEAMHGGKQQRDRELTLANFKSGRMNILVATDVASRGLDIDNIEYVVNFDFPNQTEDY
IHRIGRTARSDKTGTAFTFFTHKNVRQARDLIDILDEANQEISAELVQLAGMSNYLRKSS
TLKKNPPAFQQKPPGRITGFGNSSSSFPTQDIRIVNSGISYQNGSSAMNKINSAAENPHL
PTSQYLTTFKSATSDQSISGRKPTLSSQTNYGGLPQPIPVNDSQIKASFSKTSVPSCVNL
TVNETGKWDRHVSTEKVSSILTAPIPVIQNSNTVTEASGQQWPTNQWGTDKNQVQTHWNP
SVPDILSANGSFAQHSAGQNPKRPTLMDPSSSHASLVNPSNDISLPGIRPRGTMNQLNGP
STNVAQYVQPWSGFVSNPYSYAAPLPTATDIPATPNWGSGWAPNFHGGY
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaggtgttagcaggttccatagttcacgttctcctgttagaagtgtatctaga
tggtcgtcatttagtcagaatcccaaacgtgggaaattagagatggacatggattttgct
gcacctgactggaaatcggcagaacttccgaagtttgaaaagaaattttaccaagaacac
ccgttgtcagcttctagatccgaggcagaggtagaggcattccgtaaaaagtataagatg
tcactttctgggagagatgtcccccgtcccgtactatcgttcaatgaattgaatgttcct
gactacatacttagtgtaattgccaagaatggatggcagcttcccactcctatccagtct
caaggatggcctatggcgctttctggtcgtgatgtggttggaattgctcagacaggctcg
ggaaagacagcgtcatttctgctcccagctgtcattcatataatggcacaaccgcgattg
ttacgcaatgaaggtccaatatgtttaattcttgtccccactcgggaactcgcacaacaa
gttcttgtcgtagcaaaagaatttgcggacgccgcaagcttacgtgcaatgtgtttttat
ggtggctctgcaaaaggcactcagcttcgtgaaatgcaaaaaggtggtgagatctgtatt
gcaactcccggccggctcattgacttcattcgggttcaaagaaatctcttgtctagagta
acttacttggtactagacgaggcagacaggatgttggatatgggatttgagcctcagatt
cgtaagattataggccacacacgtcctgatcgccaaaccctcatgtggtctgcaacatgg
ccaagagaggtgcaaacattagccagagaattcctcactgactatattcaagtaaatata
gggtctgtgtcgcttcacgccaacccaaacatcacacaaatagttgagataatggacgat
tggagtaaagaacagcgtctgattgaacttttgacgagctttggacgagcacgtacacta
gtattcgttgagacgaaaaggcggacggaccagctgacaaattcacttaggcgtcgtgga
ttttatgtagaagcgatgcacggtggaaagcagcaaagagatagggagctcactcttgca
aattttaaaagcggaaggatgaatatattggtagctacagatgtcgcttctcgtggtctt
gatattgacaatatagagtacgtagtaaactttgattttccaaaccaaaccgaagattac
attcatcgcataggacggactgcgcgtagtgataaaacgggaaccgcattcacttttttc
acacataagaacgtaagacaggctcgtgatctgattgacatactggatgaagccaatcaa
gagataagtgcagagctcgtccagctggctggaatgtccaattatctccgaaagtctagc
acgctcaaaaaaaatccaccagccttccaacaaaagccacctggtcgtatcactggcttt
gggaattcatcttcaagcttcccaacacaagatattagaattgtcaactctggaatttca
tatcaaaatggttcatctgctatgaataaaattaattcagctgccgaaaatcctcacttg
ccaactagccagtatctcacaacgttcaaatccgctactagcgaccagtccattagtggt
cgcaaacccactcttagtagtcagacaaattatggaggactaccacaacctattcctgta
aatgactctcagattaaagctagcttttcgaagactagtgtgcctagctgtgtaaatctc
acagtaaatgagacagggaaatgggataggcatgtcagcacagagaaagttagttctata
ttaactgcaccaattcctgtcattcaaaattcaaatacagtaactgaagcaagtggtcaa
cagtggcccactaatcagtggggtaccgacaaaaatcaggtccaaactcattggaatcca
tcagttcctgacattttgtcagccaatggttcatttgctcagcattccgctggtcaaaat
cctaaacggccgacgctcatggatccatcttcatctcacgccagtttagtaaatcccagc
aatgatatatctctaccaggtattagacctcgaggtaccatgaaccaattgaatgggccc
tcgacaaatgttgcccagtatgtacagccatggtcaggttttgtttcaaatccctactca
tatgctgcgccactccctactgctactgacataccagccacacctaactggggttctgga
tgggctccaaactttcacggaggttattaa
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