Schistosoma mansoni: Smp_024140.1
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Entry
Smp_024140.1 CDS
T01095
Name
(RefSeq) putative polyadenylate binding protein
KO
K13126
polyadenylate-binding protein
Organism
smm
Schistosoma mansoni
Pathway
smm03015
mRNA surveillance pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Smp_024140.1
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_024140.1
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_024140.1
03041 Spliceosome [BR:
smm03041
]
Smp_024140.1
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Smp_024140.1
mRNA cycle factors
Stress granule specific factors
Smp_024140.1
Spliceosome [BR:
smm03041
]
Complex C
Other components
Complex C specific factors
Smp_024140.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_7
RRM_5
C2c1_Nuc-II
Motif
Other DBs
NCBI-GeneID:
8349009
NCBI-ProteinID:
XP_018655082
LinkDB
All DBs
Position
W:complement(<39477708..>39491018)
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AA seq
724 aa
AA seq
DB search
MAVSAASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVN
FEDPKHAEQALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDT
FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKT
ERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFL
DPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYV
KNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTI
IGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAFQQT
QRFYHPSGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSAPNPAAITANQMASFAQF
RTPGVNRPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQGVVVPQVLGATAGGLNQ
RPTAASVVAGPPSVNPAMRVASQVPRAVMHSGMSNITSTATNVRFHQTARNVSAQPTLVP
AGSMSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGV
DNAEVINLLESEELLRAKCEEGINVLRSSQNQQGDIAEGRHTSTGQNGDGSTGTGSMKPE
DSNN
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggctgttagtgcagcgagtcaagggttgatgaattcatccctatatgttggagattta
cacccaagagtttctgattccgcgttgcaagctaaattttctgaaatcggtccagtcctt
agtgctcgtgtttgccgggatctagccactcgtcattctctcgggtatggatatgttaat
ttcgaagatccaaagcatgccgaacaagcgcttgaagtcttgaattatgagtcactaatg
ggacgccctatcagaattatgtggtcacagagagatccatctttgaggaaatctgggaaa
ggaaacatatttatcaaaaacctggataaatccattgaacagaaggaattgtatgacact
tttagctttttcggtcgaatcttatcgtgcaaaattgttatggacgaaaacggacagtcc
aaaggctatggctttgtacatttcgagaaggaagagtgtgccgaacgtgccattgagaag
attaacaatatgattattcgagatcgtgtcgtttatgttggcaagtttattcccaaaaca
gaacgtaaatctcaagctcgaaaagttaaattcaataacctctatatcaaaaacttccca
ccggaaaccgataacgagaagctaaaagaaatgtttaatgagtttggagaaatcaagagt
gcttgcgtcatgaaagatagcgaagggaaatcgaaaggattcggatttgtgtgtttctta
gatcctgaccacgccgaaaatgcggtcaagactatgcatggtaaagagatagagggaaga
gctctgtactgtgctcgtgctcaacgcaaagaagaacgacaagaggaactaaaacagaga
cttgaaaaacaaagggccgaacgtcagtccagctatatgttgaacgtcaatttgtatgtc
aagaacctggatgataatatcgatgataaacgactagaggaggcttttagtgttcatggt
tctatcactagtgccaaggttatgaaagatgcaaataatcgatccaaaggttttggattt
gtttgttttgcgaaccctgaacaagcggccagggcagtaactgatatgaacggaacaatc
ataggttccaagcctctatatgttgcactagcccagaggaaagaagatcgtcgggcgaag
ttaattgaagaacatcagcagcgaatggctcaataccggaatccagtcgcctcaatgatt
ccagcagttcctggccacgcagcacctcatagcttcttccctcctgccttccagcagacc
caacggttttatcacccttcgggcgctgtccttagttcgcagcctcgttggaatcgagcg
gccgggatacccgcacaaattggtggccttccaaacagaccgcctgttgctggatactat
cctagtgcgcccaatcctgctgcaattacagctaaccaaatggcttctttcgctcaattc
cgcacaccaggtgtcaacagaccaatggtacccaacggcatgtcatccataccctcaact
cacttacaaactgcagctgttttcaaccagactgccaatcaacagagacaacaagcatct
gggagacagggtgtggttgttcctcaagtgcttggggctacagctggtggtttgaatcaa
cgtccaactgcagcttcagtagttgcaggtccaccgtcagtcaatcctgccatgcgagta
gcctcgcaagttccaagagccgtaatgcattccggtatgtcgaatataaccagtacagca
acaaatgttaggttccatcagacagcccgcaatgtctcagctcagcctacgctcgttcca
gctggaagtatgtctacactcttacaaccccttggcgatcaagggcaactaacaataagt
gcattggctcagttgtcagaagaggaccagaaaagaacgctcggggaacatctttatcca
cgtatcaaggcaatgtatcctaacttggccaacaagcttacgggaatgcttttgggagta
gataacgcagaggttataaatcttttagaatctgaagaactgctacgcgctaagtgtgaa
gagggcattaatgtactgagaagcagtcaaaatcaacaaggtgacattgcagaaggtaga
catacctcaacaggtcagaatggtgatggctcaactgggacagggtctatgaaacctgaa
gattccaataactaa
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