Schistosoma mansoni: Smp_024970
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Entry
Smp_024970 CDS
T01095
Name
(RefSeq) ccr4 not-related
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_024970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_024970
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Smp_024970
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Smp_024970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
8352395
NCBI-ProteinID:
XP_018653196
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Position
6:complement(10850752..10859037)
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AA seq
678 aa
AA seq
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MAGIGQRFTSADHSVPWNTQTQYNMGRAMVHDYNKPVTTYGSNFTKRPLFSAGNPVNTGA
PSFSDIATLSTSGYNSRPGSSQRNGELISSIPNAFSGRTTYPTALDSSLENGPSYFNALN
YNNSQAGPARNFSEPSLFSSLSTINRTAGNDLTNNRIGPGSITPSVPMNTAMALASRNPG
NLYSNSIGSENTSSNSTNLSLSSSSRGVTLDPSDFPPILTSTGRSGNSSTPFHSSANQPP
LRNYVSIMSKGSSTIDQSLNQFNHSSNNQAAPLEFSKQDFPALPGSHQPTTSTTTTVSTT
SSLTVNSTSAHRSLSASSITQTPASTNSRRLFSHTSNHVLGPSSVRNQPGYSNVPPKSVG
SSNGIQLLPNHLVTNIPKNMICDQFGMLGLLKLIRVGDYDATLNMLAPGLDLSSLHSNWQ
TPGELHTTFVSPLQDSCFGRPQDMDYPVPPEYLIRHLVTDRLPDPPMNQLSEETLFWLFY
NCCREEAQLVVAKELYQREWRFHKKEQIWLTRIVGANFTSDNNSEQGDYYFWDPVKAQKS
THQMTILYSDLDNAPAAFRLSSGPFIPFTVNSLTTGPSVNSSNAATLASLFNTRQQQPIK
QPQQLNSNPNYFSSHNRTAGPVNSLFTNRSAPVSVPVTNTVIPSTETTSTTNSNFNRLSN
PSLVNDNPNQVVFDGSQI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaataggacagcgtttcacttctgctgaccactctgttccctggaacactcag
actcaatataatatggggagggctatggtacatgattacaataaacctgtcaccacttac
ggcagcaattttacaaaacggcctctgtttagtgccggtaatccggtgaatactggggca
cctagtttcagtgatattgcaacgctttcaacgagtggttataattctagacctgggtct
tctcagcgtaatggtgagcttatcagttctatacccaatgcattctctggaagaacaaca
tatcctactgcactagattctagtctggaaaatggtccttcatatttcaatgcattaaat
tataataatagtcaggctggtcctgcaaggaatttttccgaaccttctcttttctcttcg
ttatccaccatcaatcggacagctggaaatgacttaacaaacaacagaatcggacctgga
agtatcaccccatcagttcctatgaacactgctatggccctggcatctcgtaaccctgga
aatctttattcaaactcaattgggagtgaaaatacttcttcgaattccacaaacctttct
ttatcttcgtcttcacgtggcgttactttagatccttcagatttccctccaattttaaca
tcgactgggcggagtgggaattcttccacaccctttcattcctcggcaaaccagcctccc
ttgcggaactatgtttctattatgtcaaaagggtcttcaaccatagaccagagtttgaat
caatttaatcattcttcaaataaccaggcagctcccctggaattttctaagcaggatttc
cccgctttacctggttcgcaccaacctaccactagcactactacaacagtgtcgacgacg
agttccttaactgtcaattcaacatctgctcatcgttccttgtcggctagttccataact
caaactcctgcttctacaaattctcgacgattgtttagccatacatccaaccacgtttta
ggaccatcatcagtccgtaatcagccgggatattcaaatgttcctcctaaatctgttggc
tcctcaaatggtatacagttacttcctaatcatttagttacaaatattcctaaaaatatg
atttgtgatcagttcggaatgttaggtttattaaaactaattcgcgttggtgattatgat
gctacgttgaatatgctagctcctggattagatttatcctcattacacagtaattggcag
acacctggtgagcttcataccacctttgtttcacctcttcaagattcttgttttggacgt
ccacaagatatggattatcctgttccaccggaatatcttatacgacatctagttacggat
cgtttacctgatccacctatgaatcaattgtcagaagagacattgttttggttattttat
aattgttgccgagaagaagcacagttggttgtggcgaaagaactctatcaacgtgaatgg
cgatttcataaaaaagaacaaatatggcttactcgtatagtaggtgccaatttcacgtca
gataacaattctgaacaaggtgattactacttctgggatcctgttaaagcgcaaaagtct
acccatcaaatgactatcttatattcagatctggataatgcaccagcagcatttcgtctt
agttcaggaccatttattccgtttactgtcaattctctgactactggaccatcggtcaat
tcatcaaatgctgcaacgttagctagtctgttcaacactcgtcagcagcaaccaattaag
caaccacaacaactgaattcaaatccaaattatttttcatctcataatcgaactgctggt
cctgtaaattcattgttcactaatcgatcagctccagtatcagttcctgtgactaataca
gtgattccttctacagagactacatcgaccactaactcaaactttaatcgcctgtccaat
ccatcacttgttaatgataatcccaatcaagtagtttttgatggttcacaaatttag
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